Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq279770 95.1 9e-15 seq44495 93.3 3e-14 seq21568 91.5 1e-13 seq48980 87.8 1e-12 >seq279770 Length=767 Score = 95.1 bits (104), Expect = 9e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| || || || || ||||||||||| || | ||| ||||| |||| || Sbjct 618 ACCAAATGCAGGGTAGATTCCTTCTGAATATTGTAGTCGGCGAGAGTTCGACCGTCCTCA 559 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | ||||||||| ||||| ||||||| ||||||||| | || | ||||||||||| Sbjct 558 AGCTGCTTACCAGCAAAAATCAGTCTCTGTTGATCAGGTGGGATACCCTCCTTGTCTTGG 499 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || || || ||| | | | || || |||||||| | ||||| ||||| Sbjct 498 ATTTTAGCCTTGACATTGTCAATTGTATCAGAACTTTCCACCTCAAGAGTAATGGTTTTG 439 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || || | || || ||||| || |||||| Sbjct 438 CCAGTAAGGGTCTTCACAAATATTTGCATC 409 Score = 93.3 bits (102), Expect = 3e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 48557 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTC 48616 ||||||||| || || || || || ||||||||||| | || |||| |||| || Sbjct 391 CACCAAATGGAGTGTAGATTCCTTCTGGATATTGTAATCGGCAAGCGTTCGGCCGTCCTC 332 Query 48617 CAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCT 48676 | |||||||| ||||| || || | |||||| || | |||| |||||| || || Sbjct 331 AAGTTGCTTACCAGCAAAGATAAGCCTCTGTTGGTCGGGTGGAATGCCCTCTTTATCTTG 272 Query 48677 AATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTT 48736 ||||||| |||||| | | | ||||| |||||||| | || || ||||| Sbjct 271 AATCTTTGCCTTTACATTGTCAATTGTGTCTGAGCTTTCCACCTCGAGGGTGATTGTTTT 212 Query 48737 TCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || || | |||||||| || || |||||| Sbjct 211 GCCAGTGAGGGTTTTTACGAAGATTTGCATC 181 >seq44495 Length=1402 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || ||| ||| || ||||| |||||||||| ||| | | | || || | |||| Sbjct 716 TGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGCGAGAGTCCTTCCATCCTCAAGCTGC 775 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || || || || ||||| | ||| ||||||| || | ||| |||||||| ||| || Sbjct 776 TTCCCAGCGAAGATCAGCCTCTGCTGATCCGGAGGGATGCCTTCCTTGTCCTGAATTTTA 835 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 ||| ||| | | | | || || ||||||||||| || || || ||||| ||| Sbjct 836 GCTTTCACATTATCGATCGTGTCAGAGCTCTCCACCTCCAGGGTGATGGTCTTTCCGGTC 895 Query 48744 AAAGTTTTTACAAAAATCTGCATC 48767 || || || || || ||||||||| Sbjct 896 AAGGTCTTCACGAAGATCTGCATC 919 >seq21568 Length=652 Score = 91.5 bits (100), Expect = 1e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || ||| |||||| |||||||||||||||| | | | ||| | || ||||| || Sbjct 113 TGGAGGGTGGACTCTTTCTGAATATTGTAATCAGCCAAAGTCCGACCATCCTCCAATTGT 172 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || || ||||| |||| || ||||||||| | |||| ||||||||||| ||||||| Sbjct 173 TTTCCAGCAAAGATCAATCTCTGTTGATCTGGAGGAATCCCCTCCTTGTCTTGAATCTTT 232 >seq48980 Length=3483 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 |||| || || | ||| |||||| ||| || || || ||||| || | || ||||| Sbjct 1041 AGCCTTAAGACAAGATGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGTGTTCGA 982 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||||||||| || || || ||||| || |||| || | |||||| Sbjct 981 CCATCCTCCATCTGCTTACCGGCGAAAATGAGACGCTGCTGGTCCGGCGGTATTCCCTCC 922 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || ||||||| || ||| | | | | || || ||| ||||| | || Sbjct 921 TTATCCTGAATCTTTGCCTTGACATTATCGATGGTATCAGAACTCTCGACCTCGAGAGTT 862 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || | ||||| || || |||||||| Sbjct 861 ATGGTCTTCCCGGTAAGCGTTTTCACGAAGATCTGCAT 824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379521063535176