Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq21568 105 6e-18 seq279770 98.7 8e-16 seq281289 95.1 1e-14 seq44495 86.0 5e-12 >seq21568 Length=652 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||| || || || || ||||| || || || ||||| || ||| ||| ||| Sbjct 538 AATGCAGATTTTCGTGAAGACATTGACTGGCAAGACCATCACTTTGGAAGTAGAAAGTTC 479 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | | || | ||| ||| || |||||||||||| | || || || Sbjct 478 CGACACCATCGACAATGTGAAGACAAAGATTCAAGACAAAGAGGGAATCCCACCTGACCA 419 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||| || |||||||| ||||| ||| |||||||| | |||| | || ||||| || Sbjct 418 GCAGAGGCTGATCTTTGCAGGCAAGCAACTGGAAGATGGCAGAACTCTAGCAGATTACAA 359 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||| ||||| ||||| |||||||| |||| | || | || || ||||| Sbjct 358 CATCCAAAAGGAATCAACTCTGCATTTGGTGCTTCGACTGCGTGGTGGGAT 308 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 28647 GACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAA 28706 ||||| ||||| | || ||||||||||||| | |||||||| || ||||||||||| Sbjct 222 GACAAGGAGGGGATTCCTCCAGATCAACAGAGATTGATCTTTGCTGGAAAACAATTGGAG 163 Query 28707 GATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCAC 28757 ||| | ||| |||| ||||| || ||||| ||||| || || || ||| Sbjct 162 GATGGTCGGACTTTGGCTGATTACAATATTCAGAAAGAGTCCACCCTCCAC 112 >seq279770 Length=767 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||||||||| || || | || || ||||||||||| || |||| ||| Sbjct 410 ATGCAAATATTTGTGAAGACCCTTACTGGCAAAACCATTACTCTTGAGGTGGAAAGTTCT 469 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | || ||||| |||||| ||||| ||||| | || |||||| Sbjct 470 GATACAATTGACAATGTCAAGGCTAAAATCCAAGACAAGGAGGGTATCCCACCTGATCAA 529 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 |||||||| || ||||| || || || | || || | |||| | ||||| || || Sbjct 530 CAGAGACTGATTTTTGCTGGTAAGCAGCTTGAGGACGGTCGAACTCTCGCCGACTACAAT 589 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGT 28762 ||||| || |||||||| ||||| |||| Sbjct 590 ATTCAGAAGGAATCTACCCTGCATTTGGT 618 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || |||||||| | || || ||||| || ||| ||| |||| ||| Sbjct 182 ATGCAAATCTTCGTAAAAACCCTCACTGGCAAAACAATCACCCTCGAGGTGGAAAGCTCA 241 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | || | ||| ||| || || |||||||| | || || ||| Sbjct 242 GACACAATTGACAATGTAAAGGCAAAGATTCAAGATAAAGAGGGCATTCCACCCGACCAA 301 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| ||||||||||| || || ||| | || || ||| | |||||||| || Sbjct 302 CAGAGGCTTATCTTTGCTGGTAAGCAACTTGAGGACGGCCGAACGCTTGCCGATTACAAT 361 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || || || |||||||| || || |||| | ||| | || || ||||| Sbjct 362 ATCCAGAAGGAATCTACACTCCATTTGGTGCTTAGACTTCGCGGTGGGAT 411 >seq281289 Length=787 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| ||||| | || || ||||| || ||| || |||| ||| Sbjct 326 ATGCAAATCTTTGTGAAAACTCTCACCGGCAAAACAATAACCCTTGAGGTGGAAAGTTCT 385 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | || | ||| ||||| || ||||||||| | || ||| || Sbjct 386 GATACTATTGACAATGTGAAGGCCAAAATTCAGGATAAAGAGGGAATCCCTCCAGACCAG 445 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || || ||||| ||||| || || || | || ||| | ||| | |||||||||||| Sbjct 446 CAAAGGCTTATTTTTGCTGGAAAGCAGCTCGAGGATGGTCGAACCCTCGCCGATTATAAC 505 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || ||||||||||| || || ||| |||| | | ||||| || || || Sbjct 506 ATACAAAAAGAATCAACCCTTCACTTGGTGCTCCGTTTACGTGGTGGAAT 555 >seq44495 Length=1402 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || ||||| || | || ||||||||||| ||| ||| ||| | || Sbjct 1374 ATGCAAATTTTCGTAAAGACCCTGACAGGTAAAACCATCACCCTCGAGGTTGAATCCTCT 1315 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | | ||| ||| ||| ||||| ||||| | ||| ||| || Sbjct 1314 GATACCATCGATAACGTTAAGGCAAAGATCCAGGACAAGGAGGGTATTCCCCCAGACCAG 1255 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || ||||||||||| || || || ||| | || ||| | || | |||||||||||| Sbjct 1254 CAAAGACTTATCTTCGCCGGGAAGCAACTAGAGGATGGTCGTACCCTTGCCGATTATAAC 1195 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATT 28765 || || || || || ||||| ||| | || || Sbjct 1194 ATCCAGAAGGAGTCGACTCTTCACCTTGTGTT 1163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423822909917448