Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq52514 89.7 6e-13 >seq52514 Length=1911 Score = 89.7 bits (98), Expect = 6e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 138290 ACCTACCTGTGCATTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAAC 138349 || |||||| ||||| | || || ||||| | ||| || ||||| ||||| ||||||| Sbjct 1439 ACATACCTGGGCATTCATGTTGGCTCCATCCATATAGACTTGACCTCCATTCTCATGAAT 1498 Query 138350 GATCTTACATATCTGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAA 138408 ||||||||| |||| ||| | |||| | || |||||||| ||||||||||||| Sbjct 1499 GATCTTACAAATCTCATCAATGCCTTCTTCATACACTCCATGAGTGGATGGATATGTAA 1557 Score = 87.8 bits (96), Expect = 2e-12 Identities = 91/117 (78%), Gaps = 2/117 (2%) Strand=Plus/Plus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 ||||||||||| || | |||||| || || |||||||||||||| || ||||| || || Sbjct 1144 ACACCAATAGGGCCCATGCCAGGGCCACCTCCTCCATGTGGAATGCAAAATGTTTTGTGG 1203 Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCA-CATGGTTTTGCTAGACCTACCTG 138298 | ||| ||||| || ||||| || ||| | || | ||| ||| |||||| ||||| Sbjct 1204 AGATTGAGATGGCAAACATCAGCTCCA-ATCCATCCTGGGCTTGTTAGACCCACCTG 1259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576790158002240