Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19]
305,112 sequences; 176,727,258 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq42289 134 2e-26
seq218924 123 3e-23
seq273947 114 2e-20
seq44487 114 2e-20
seq108436 86.0 7e-12
>seq42289
Length=1066
Score = 134 bits (148), Expect = 2e-26
Identities = 198/278 (71%), Gaps = 2/278 (1%)
Strand=Plus/Plus
Query 175314 GCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATT 175373
||| ||||| ||||| || || || ||||| ||| | || || ||| | || |||||
Sbjct 763 GCCCGGTACCGGAAAAACTCTTCTGGCCCGGGCCGTGGCCGGGGAAGCTGGGGTGCCATT 822
Query 175374 CATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGT 175433
| || ||| |||| || | ||||| || ||||||||||||||||||| ||| ||
Sbjct 823 CTTCTCGTGTGCTGCTTCAGAGTTTGTAGAATTGTTTGTTGGTGTGGGTGCTTCAAGAGT 882
Query 175434 TCGCGATCTCTTTGAAATCGCC-CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGA 175492
|| || | ||||| | ||| | ||| | || || ||||| |||||||||||||
Sbjct 883 ACGGGACTTGTTTGACAAAGCCAAGTCCAAAGC-TCCTTGCATTGTGTTCATTGATGAGA 941
Query 175493 TTGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAAC 175552
||||||| ||||| | || | | || ||| | | |||||| |||||||| |
Sbjct 942 TTGATGCCGTGGGGAGACAGAGAGGGGCAGGTCTTGGAGGTGGAAATGATGAGAGAGAGC 1001
Query 175553 AAACAATTAATCAACTACTCACCGAGATGGATGGCTTT 175590
|||| || ||||| ||| | || ||||||||||| |||
Sbjct 1002 AAACTATCAATCAGCTATTGACTGAGATGGATGGGTTT 1039
>seq218924
Length=406
Score = 123 bits (136), Expect = 3e-23
Identities = 192/270 (71%), Gaps = 7/270 (3%)
Strand=Plus/Minus
Query 64949 TTGACAAATACATTAAGGATG-GATCTGAAAAGAAGCAGTTATTTGAAGCCATCCAAACT 65007
|||| | || || |||||| ||| ||| ||||| | |||||| || || |||||
Sbjct 377 TTGAAACCTATATCAAGGATTCGAT-TGAGAAGAATCGGTTATTCCGTGCTATTGAAACT 319
Query 65008 GTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAA-AGTCTCG 65066
|| || || | |||| ||||| | ||||| |||| ||| |||||| | || |||
Sbjct 318 GTCCCCTGCGTCAAGAAAAAGGCTGATTGGGCGTTGAAGTGGATTGACAGTACAGAATCG 259
Query 65067 CTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTC 65126
||||| ||||| |||| ||||| || ||||| ||||| || |||||||| ||
Sbjct 258 ----TTCGCTGAGCGGATTTTGGCGTTCGCTTGTGTTGAGGGAATTTTCTTCTCAGGTAG 203
Query 65127 ATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAA 65186
|||||| |||||| ||||| || || || || || ||||| || || ||||||||
Sbjct 202 TTTCTGCTCTATTTTCTGGTTAAAAAAACGTGGGCTAATGCCTGGATTAACGTTCTCAAA 143
Query 65187 TGAACTTATTTCCCGAGATGAGGGTCTCCA 65216
||| | ||||| ||||||| || || ||
Sbjct 142 TGAGTTGATTTCAAGAGATGAAGGGCTTCA 113
>seq273947
Length=700
Score = 114 bits (126), Expect = 2e-20
Identities = 165/231 (71%), Gaps = 5/231 (2%)
Strand=Plus/Plus
Query 64987 TTATTTGAAGCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAA 65046
|||||| || ||| | || || || ||| | |||||||||| | ||||| | ||
Sbjct 68 TTATTTCGTGCAATCGAGACGGTCCCCTGTGTCAAGAAGAAGGCTGATTGGGCGTTAAAG 127
Query 65047 TGGTTTGACA-CAAAGTCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGA 65105
||| | |||| || | ||| || |||||||| |||| || ||||| ||||| ||
Sbjct 128 TGGATCGACAGCACGGAATCG----TTTGCCGAGCGTATTTTGGCATTTGCTTGTGTTGA 183
Query 65106 GGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCAT 65165
|| ||||||||||| || |||||| | |||| |||||||| || || || | ||
Sbjct 184 AGGAATCTTCTTCTCAGGTAGCTTCTGCTCCATTTTCTGGTTGAAAAAACGTGGATTAAT 243
Query 65166 GCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCA 65216
||| || || ||||||||||| | ||||| ||||| |||||||| ||
Sbjct 244 GCCTGGACTCACATTCTCAAATGAGTTGATTTCACGAGACGAGGGTCTTCA 294
>seq44487
Length=1401
Score = 114 bits (126), Expect = 2e-20
Identities = 217/316 (69%), Gaps = 10/316 (3%)
Strand=Plus/Plus
Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374
||||| || || ||||| | || ||| ||||| || |||||| || |||||| ||
Sbjct 82 CCAGGAACTGGGAAGACTTTGCTAGCCAAGGCCATTGCTGGTGAAGCAGGTGTCCCGTTT 141
Query 175375 ATC--CAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGG 175432
|| || | || | | | ||||| ||||||||||||||| | ||||| | |
Sbjct 142 TTCTCCATT--TCAGGTTCTGAGTTTGTTGAGATGTTTGTTGGTATTGGTGCTTCTCGAG 199
Query 175433 TTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGA 175492
| || |||||||| | | ||| |||||| ||| || ||||| || ||||||| |
Sbjct 200 TACGTGATCTCTTCAAGAAGGCCAAGGAAAATGCACCTTGCATTGTGTTTGTTGATGAAA 259
Query 175493 TTGATGCGGTGGGCAAGCAACGCAGCGCTGG---TGGTATGCCAGCAAATGACGAGAGAG 175549
||||||| || || ||| | || |||| |||| | |||||||| |||
Sbjct 260 TTGATGCTGTTGGACGTCAAAGAGGCACTGGCATTGGT---GGTGGGAATGACGAACGAG 316
Query 175550 AACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCATTG 175609
|||||||| |||| || || || || || |||||||| ||||| | ||||| |||
Sbjct 317 AACAAACACTTAACCAGCTTCTAACTGAAATGGATGGGTTTGAGGGAAACACTGGGATTA 376
Query 175610 TGGTTATTGCGGCCAC 175625
| || ||||| |||||
Sbjct 377 TTGTAATTGCTGCCAC 392
>seq108436
Length=234
Score = 86.0 bits (94), Expect = 7e-12
Identities = 74/92 (80%), Gaps = 0/92 (0%)
Strand=Plus/Minus
Query 76163 AATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACACAGACCTATTGGTTTG 76222
|||| |||||| ||||||||||| ||| ||| ||| | ||||||||||||||||| |
Sbjct 158 AATTATTATCCTGTTGAGACTGCTAGAAGGTCAAATCTAAGACACAGACCTATTGGTATT 99
Query 76223 GGTGTTCAAGGTCTCGCGGATGTATTTATTTT 76254
|| ||||||||||| || ||| || |||||
Sbjct 98 GGGGTTCAAGGTCTTGCAGATACTTTCATTTT 67
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 594294343202560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |