Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq42289 134 2e-26 seq218924 123 3e-23 seq273947 114 2e-20 seq44487 114 2e-20 seq108436 86.0 7e-12 >seq42289 Length=1066 Score = 134 bits (148), Expect = 2e-26 Identities = 198/278 (71%), Gaps = 2/278 (1%) Strand=Plus/Plus Query 175314 GCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATT 175373 ||| ||||| ||||| || || || ||||| ||| | || || ||| | || ||||| Sbjct 763 GCCCGGTACCGGAAAAACTCTTCTGGCCCGGGCCGTGGCCGGGGAAGCTGGGGTGCCATT 822 Query 175374 CATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGT 175433 | || ||| |||| || | ||||| || ||||||||||||||||||| ||| || Sbjct 823 CTTCTCGTGTGCTGCTTCAGAGTTTGTAGAATTGTTTGTTGGTGTGGGTGCTTCAAGAGT 882 Query 175434 TCGCGATCTCTTTGAAATCGCC-CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGA 175492 || || | ||||| | ||| | ||| | || || ||||| ||||||||||||| Sbjct 883 ACGGGACTTGTTTGACAAAGCCAAGTCCAAAGC-TCCTTGCATTGTGTTCATTGATGAGA 941 Query 175493 TTGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAAC 175552 ||||||| ||||| | || | | || ||| | | |||||| |||||||| | Sbjct 942 TTGATGCCGTGGGGAGACAGAGAGGGGCAGGTCTTGGAGGTGGAAATGATGAGAGAGAGC 1001 Query 175553 AAACAATTAATCAACTACTCACCGAGATGGATGGCTTT 175590 |||| || ||||| ||| | || ||||||||||| ||| Sbjct 1002 AAACTATCAATCAGCTATTGACTGAGATGGATGGGTTT 1039 >seq218924 Length=406 Score = 123 bits (136), Expect = 3e-23 Identities = 192/270 (71%), Gaps = 7/270 (3%) Strand=Plus/Minus Query 64949 TTGACAAATACATTAAGGATG-GATCTGAAAAGAAGCAGTTATTTGAAGCCATCCAAACT 65007 |||| | || || |||||| ||| ||| ||||| | |||||| || || ||||| Sbjct 377 TTGAAACCTATATCAAGGATTCGAT-TGAGAAGAATCGGTTATTCCGTGCTATTGAAACT 319 Query 65008 GTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAA-AGTCTCG 65066 || || || | |||| ||||| | ||||| |||| ||| |||||| | || ||| Sbjct 318 GTCCCCTGCGTCAAGAAAAAGGCTGATTGGGCGTTGAAGTGGATTGACAGTACAGAATCG 259 Query 65067 CTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTC 65126 ||||| ||||| |||| ||||| || ||||| ||||| || |||||||| || Sbjct 258 ----TTCGCTGAGCGGATTTTGGCGTTCGCTTGTGTTGAGGGAATTTTCTTCTCAGGTAG 203 Query 65127 ATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAA 65186 |||||| |||||| ||||| || || || || || ||||| || || |||||||| Sbjct 202 TTTCTGCTCTATTTTCTGGTTAAAAAAACGTGGGCTAATGCCTGGATTAACGTTCTCAAA 143 Query 65187 TGAACTTATTTCCCGAGATGAGGGTCTCCA 65216 ||| | ||||| ||||||| || || || Sbjct 142 TGAGTTGATTTCAAGAGATGAAGGGCTTCA 113 >seq273947 Length=700 Score = 114 bits (126), Expect = 2e-20 Identities = 165/231 (71%), Gaps = 5/231 (2%) Strand=Plus/Plus Query 64987 TTATTTGAAGCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAA 65046 |||||| || ||| | || || || ||| | |||||||||| | ||||| | || Sbjct 68 TTATTTCGTGCAATCGAGACGGTCCCCTGTGTCAAGAAGAAGGCTGATTGGGCGTTAAAG 127 Query 65047 TGGTTTGACA-CAAAGTCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGA 65105 ||| | |||| || | ||| || |||||||| |||| || ||||| ||||| || Sbjct 128 TGGATCGACAGCACGGAATCG----TTTGCCGAGCGTATTTTGGCATTTGCTTGTGTTGA 183 Query 65106 GGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCAT 65165 || ||||||||||| || |||||| | |||| |||||||| || || || | || Sbjct 184 AGGAATCTTCTTCTCAGGTAGCTTCTGCTCCATTTTCTGGTTGAAAAAACGTGGATTAAT 243 Query 65166 GCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCA 65216 ||| || || ||||||||||| | ||||| ||||| |||||||| || Sbjct 244 GCCTGGACTCACATTCTCAAATGAGTTGATTTCACGAGACGAGGGTCTTCA 294 >seq44487 Length=1401 Score = 114 bits (126), Expect = 2e-20 Identities = 217/316 (69%), Gaps = 10/316 (3%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 ||||| || || ||||| | || ||| ||||| || |||||| || |||||| || Sbjct 82 CCAGGAACTGGGAAGACTTTGCTAGCCAAGGCCATTGCTGGTGAAGCAGGTGTCCCGTTT 141 Query 175375 ATC--CAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGG 175432 || || | || | | | ||||| ||||||||||||||| | ||||| | | Sbjct 142 TTCTCCATT--TCAGGTTCTGAGTTTGTTGAGATGTTTGTTGGTATTGGTGCTTCTCGAG 199 Query 175433 TTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGA 175492 | || |||||||| | | ||| |||||| ||| || ||||| || ||||||| | Sbjct 200 TACGTGATCTCTTCAAGAAGGCCAAGGAAAATGCACCTTGCATTGTGTTTGTTGATGAAA 259 Query 175493 TTGATGCGGTGGGCAAGCAACGCAGCGCTGG---TGGTATGCCAGCAAATGACGAGAGAG 175549 ||||||| || || ||| | || |||| |||| | |||||||| ||| Sbjct 260 TTGATGCTGTTGGACGTCAAAGAGGCACTGGCATTGGT---GGTGGGAATGACGAACGAG 316 Query 175550 AACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCATTG 175609 |||||||| |||| || || || || || |||||||| ||||| | ||||| ||| Sbjct 317 AACAAACACTTAACCAGCTTCTAACTGAAATGGATGGGTTTGAGGGAAACACTGGGATTA 376 Query 175610 TGGTTATTGCGGCCAC 175625 | || ||||| ||||| Sbjct 377 TTGTAATTGCTGCCAC 392 >seq108436 Length=234 Score = 86.0 bits (94), Expect = 7e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 76163 AATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACACAGACCTATTGGTTTG 76222 |||| |||||| ||||||||||| ||| ||| ||| | ||||||||||||||||| | Sbjct 158 AATTATTATCCTGTTGAGACTGCTAGAAGGTCAAATCTAAGACACAGACCTATTGGTATT 99 Query 76223 GGTGTTCAAGGTCTCGCGGATGTATTTATTTT 76254 || ||||||||||| || ||| || ||||| Sbjct 98 GGGGTTCAAGGTCTTGCAGATACTTTCATTTT 67 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 594294343202560