Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq280556 134 2e-26 seq279770 122 2e-22 seq281289 114 2e-20 seq281664 91.5 3e-13 seq126021 89.7 9e-13 >seq280556 Length=777 Score = 134 bits (148), Expect = 2e-26 Identities = 140/184 (76%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 193178 AATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCT 193237 ||| ||||| |||| ||| || || ||| || ||||| || || || |||||||| || Sbjct 579 AATGTTATAATCGGCTAAAGTCCTGCCATCTTCCAATTGCTTCCCAGCGAAAATTAACCT 638 Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 ||||| || || || || |||||||||||||| || || | ||| | || |||||| Sbjct 639 TTGTTGGTCTGGTGGGATCCCTTCTTTATCTTGGATCTTAGCTTTAACGTTATCAATAGT 698 Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357 ||| ||| ||||||||| | ||| || ||||| ||||||| || || ||||| ||||| Sbjct 699 ATCTGAACTCTCAACTTCCAAAGTGATTGTTTTTCCTGTTAAGGTCTTCACAAAAATTTG 758 Query 193358 CATT 193361 |||| Sbjct 759 CATT 762 Score = 93.3 bits (102), Expect = 8e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || ||||| || || || ||||| | ||| || || |||||||| || || || || Sbjct 378 ATCCTCCAATTGCTTCCCAGCGAAAATCAGTCTTTGCTGGTCAGGAGGAATACCCTCCTT 437 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 || || ||||| | || | ||| ||||| || || ||||||||||| || || Sbjct 438 GTCCTGGATTTTAGCCTTCACATTGTCGATAGTGTCTGAGCTCTCAACTTCTAATGTGAT 497 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||||| || || |||||||||||||| Sbjct 498 GGTCTTTCCTGTTAAGGTCTTCACAAATATTTGCAT 533 >seq279770 Length=767 Score = 122 bits (134), Expect = 2e-22 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 ||||| |||| ||||| |||| || || |||||| ||||||| | |||| | Sbjct 624 CGAAGAACCAAATGCAGGGTAGATTCCTTCTGAATATTGTAGTCGGCGAGAGTTCGACCG 565 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | || || || |||||||| | ||||||||||||||| || || || || || Sbjct 564 TCCTCAAGCTGCTTACCAGCAAAAATCAGTCTCTGTTGATCAGGTGGGATACCCTCCTTG 505 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| ||||| | || | ||| ||| ||||| ||| || || || ||||| || Sbjct 504 TCTTGGATTTTAGCCTTGACATTGTCAATTGTATCAGAACTTTCCACCTCAAGAGTAATG 445 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || || || || |||||||||||||| Sbjct 444 GTTTTGCCAGTAAGGGTCTTCACAAATATTTGCAT 410 Score = 96.9 bits (106), Expect = 6e-15 Identities = 163/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || ||||| | | || ||| |||| ||| | ||||| || || ||||| Sbjct 417 ATTTGCATCCCACCGCGAAGTCTAAGCACCAAATGGAGTGTAGATTCCTTCTGGATATTG 358 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || |||| | ||||| || || | ||| || || ||||| || | |||||||| Sbjct 357 TAATCGGCAAGCGTTCGGCCGTCCTCAAGTTGCTTACCAGCAAAGATAAGCCTCTGTTGG 298 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || || ||||||||||| || || | |||| ||| ||| || || || Sbjct 297 TCGGGTGGAATGCCCTCTTTATCTTGAATCTTTGCCTTTACATTGTCAATTGTGTCTGAG 238 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || ||||| || || || |||||||| || |||||||| Sbjct 237 CTTTCCACCTCGAGGGTGATTGTTTTGCCAGTGAGGGTTTTTACGAAGATTTGCAT 182 >seq281289 Length=787 Score = 114 bits (126), Expect = 2e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || || |||| ||||||||| | || || |||||| ||||| | || || | | Sbjct 768 CGGAGCACCAAATGCAATGTTGATTCCTTCTGAATATTGTAGTCCGCCAAAGTGCGGCCA 709 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | |||||| || || ||||||| |||||| || ||||| || ||||| |||||| Sbjct 708 TCTTCAAGTTGTTTACCAGCGAAAATTAGTCTCTGCTGGTCAGGGGGGATTCCCTCTTTA 649 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || || | || | ||| || ||||| || || || |||| || || Sbjct 648 TCTTGGATCTTAGCCTTCACATTATCGATGGTATCAGAGCTTTCCACCTCTAAGGTGATG 589 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 |||||||| || || ||||| || || ||||||||| Sbjct 588 GTTTTACCAGTGAGGGTTTTCACGAAGATTTGCATT 553 >seq281664 Length=792 Score = 91.5 bits (100), Expect = 3e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || || |||||||| || || || | ||||||||| || || || || ||||| || Sbjct 622 TCCTCCAACTGTTTTCCAGCGAAGATGAGTCTCTGTTGGTCTGGGGGGATACCTTCCTTG 681 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || || |||| || | || ||| || || ||||||||||| || | || || Sbjct 682 TCCTGAATCTTGGCCTTCACGTTGTCAATTGTGTCTGAAGACTCAACCTCCAAGGTGATG 741 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || ||||| ||||| |||||||| Sbjct 742 GTCTTTCCGGTGAGAGTTTTGACAAAAATTTGCAT 776 >seq126021 Length=250 Score = 89.7 bits (98), Expect = 9e-13 Identities = 130/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 193178 AATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCT 193237 ||| || || |||| || || | | ||| || | || || || ||||| || || || Sbjct 199 AATGTTGTAATCGGCTAGTGTACGACCATCTTCGAGCTGCTTGCCTGCAAAGATCAACCT 140 Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 || ||||| || || || ||||| || ||||| || || | ||| | ||| || || Sbjct 139 TTGCTGATCCGGGGGAATACCTTCCTTGTCTTGAATCTTAGCTTTGACATTGTCGATTGT 80 Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357 || || ||||||||||| || ||||| || || || |||||||| || || ||||| Sbjct 79 GTCAGAGCTTTCAACTTCTAGTGTAATAGTCTTCCCCGTGAGCGTTTTGACGAAAATTTG 20 Query 193358 CATT 193361 |||| Sbjct 19 CATT 16 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 896223208083840