Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq280556 141 1e-28 seq281289 113 7e-20 seq218924 107 3e-18 seq281664 102 1e-16 seq126021 102 1e-16 seq279770 100 4e-16 seq21568 100 4e-16 >seq280556 Length=777 Score = 141 bits (156), Expect = 1e-28 Identities = 160/212 (75%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| | || || || || |||||||| || || || ||||| || ||| Sbjct 762 AATGCAAATTTTTGTGAAGACCTTAACAGGAAAAACAATCACTTTGGAAGTTGAGAGTTC 703 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| |||| ||||| ||| ||| || |||||||||||||| || || ||||| || Sbjct 702 AGATACTATTGATAACGTTAAAGCTAAGATCCAAGATAAAGAAGGGATCCCACCAGACCA 643 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 |||||| || |||| || || ||||| | |||||| ||| |||||| | |||||||| Sbjct 642 ACAAAGGTTAATTTTCGCTGGGAAGCAATTGGAAGATGGCAGGACTTTAGCCGATTATAA 583 Query 156002 TATATCCAAA-GAGGCGACGCTTCATTTAGTG 156032 || || ||| || |||| ||||| || ||| Sbjct 582 CAT-TCAAAAGGAATCGACACTTCACTTGGTG 552 Score = 84.2 bits (92), Expect = 3e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| | || || || || ||||| || || ||||||||||| || || Sbjct 533 ATGCAAATATTTGTGAAGACCTTAACAGGAAAGACCATCACATTAGAAGTTGAGAGCTCA 474 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || ||||| |||||| || || || || || || ||||| || || Sbjct 473 GACACTATCGACAATGTGAAGGCTAAAATCCAGGACAAGGAGGGTATTCCTCCTGACCAG 414 Query 155943 CAAAGATTGATTTATGCCGGTAAGCA 155968 |||||| |||||| || || ||||| Sbjct 413 CAAAGACTGATTTTCGCTGGGAAGCA 388 >seq281289 Length=787 Score = 113 bits (124), Expect = 7e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | ||||| | || || ||||| || || | || || ||| |||| Sbjct 326 ATGCAAATCTTTGTGAAAACTCTCACCGGCAAAACAATAACCCTTGAGGTGGAAAGTTCT 385 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| || ||||| ||||| || |||||||| || || |||||||| || Sbjct 386 GATACTATTGACAATGTGAAGGCCAAAATTCAGGATAAAGAGGGAATCCCTCCAGACCAG 445 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||| | |||| ||| || ||||||||||| ||| |||| | | |||||||| Sbjct 446 CAAAGGCTTATTTTTGCTGGAAAGCAGCTCGAGGATGGTCGAACCCTCGCCGATTATAAC 505 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 ||| ||||| | || ||||| || ||| Sbjct 506 ATACAAAAAGAATCAACCCTTCACTTGGTG 535 Score = 91.5 bits (100), Expect = 2e-13 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| || | ||||| | ||||| ||||| || || ||||| || ||| || Sbjct 553 AATGCAAATCTTCGTGAAAACCCTCACTGGTAAAACCATCACCTTAGAGGTGGAAAGCTC 612 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| || || ||||| ||| || ||||||||||| || || || || || || Sbjct 613 TGATACCATCGATAATGTGAAGGCTAAGATCCAAGATAAAGAGGGAATCCCCCCTGACCA 672 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || ||| | |||| || ||||| || || |||||| | | ||||| | || || || Sbjct 673 GCAGAGACTAATTTTCGCTGGTAAACAACTTGAAGATGGCCGCACTTTGGCGGACTACAA 732 Query 156002 TAT 156004 ||| Sbjct 733 TAT 735 >seq218924 Length=406 Score = 107 bits (118), Expect = 3e-18 Identities = 116/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 18147 AATATAATAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTAC 18206 |||| || ||||| ||||||||| || | ||||||||||| || || || || || Sbjct 87 AATACAACAAACAAGCAAAATCACAATGAAGCCCTTCATCTCTTGAAATCAACTCATTTG 146 Query 18207 TAAACGTTAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTAC 18266 |||||||| || ||||||| || | |||||||| ||| || || || |||||||| Sbjct 147 AGAACGTTAATCCAGGCATTAGCCCACGTTTTTTTAACCAGAAAATAGAGCAGAAACTAC 206 Query 18267 TAGAAAAGAATATACCCTCAACGCACGCGAACGC 18300 || ||||| || |||||||| || |||||||| Sbjct 207 CTGAGAAGAAAATTCCCTCAACACAAGCGAACGC 240 >seq281664 Length=792 Score = 102 bits (112), Expect = 1e-16 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || |||| || ||||||||||| || || || | || ||||| ||| Sbjct 548 ATGCAGATCTTCGTTAAGACTTTGACTGGAAAGACCATCACCCTCGAGGTCGAGAGCTCT 489 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || |||||||| ||||| || || || |||||||| || ||||| || Sbjct 488 GATACCATCGACAACGTGAAGGCAAAAATTCAGGACAAGGAAGGCATCCCCCCAGACCAG 429 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 ||||||||||| | |||||| |||||||| || ||| Sbjct 428 CAAAGATTGATCTTTGCCGGAAAGCAGCTGGAGGAT 393 >seq126021 Length=250 Score = 102 bits (112), Expect = 1e-16 Identities = 147/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| || | ||||| | || || || ||||||||| ||||||| ||| || Sbjct 16 AATGCAAATTTTCGTCAAAACGCTCACGGGGAAGACTATTACACTAGAAGTTGAAAGCTC 75 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||| | || || || ||| ||| || ||||| || ||||| || || || || || Sbjct 76 TGACACAATCGACAATGTCAAAGCTAAGATTCAAGACAAGGAAGGTATTCCCCCGGATCA 135 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||||| ||||| | ||| || ||||||||||||||| | || || | ||||| || Sbjct 136 GCAAAGGTTGATCTTTGCAGGCAAGCAGCTCGAAGATGGTCGTACACTAGCCGATTACAA 195 Query 156002 TATATCCAAA-GAGGCGACGCTTCA 156025 || || ||| ||| | || ||||| Sbjct 196 CAT-TCAAAAGGAGTCCACTCTTCA 219 >seq279770 Length=767 Score = 100 bits (110), Expect = 4e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| | || || | ||||| ||||| ||||| | || || ||| |||| Sbjct 410 ATGCAAATATTTGTGAAGACCCTTACTGGCAAAACCATTACTCTTGAGGTGGAAAGTTCT 469 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || || |||||| ||||| || || || || || || || ||| Sbjct 470 GATACAATTGACAATGTCAAGGCTAAAATCCAAGACAAGGAGGGTATCCCACCTGATCAA 529 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGA 155977 || ||| |||||| ||| ||||||||||| || || Sbjct 530 CAGAGACTGATTTTTGCTGGTAAGCAGCTTGAGGA 564 >seq21568 Length=652 Score = 100 bits (110), Expect = 4e-16 Identities = 151/213 (71%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || || | || ||||||||||| || || || || || ||||| ||| ||| Sbjct 538 AATGCAGATTTTCGTGAAGACATTGACTGGCAAGACCATCACTTTGGAAGTAGAAAGTTC 479 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | || || ||||| | || || ||||| ||||| || || || || || || Sbjct 478 CGACACCATCGACAATGTGAAGACAAAGATTCAAGACAAAGAGGGAATCCCACCTGACCA 419 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || || |||| | ||| || ||||| || |||||| ||||||| || ||||||| | Sbjct 418 GCAGAGGCTGATCTTTGCAGGCAAGCAACTGGAAGATGGCAGAACTCTAGCAGATTACA- 360 Query 156002 TATATCCAAA--GAGGCGACGCTTCATTTAGTG 156032 | ||||||| || | || || ||||| ||| Sbjct 359 -ACATCCAAAAGGAATCAACTCTGCATTTGGTG 328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729080713379200