Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19]
305,112 sequences; 176,727,258 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq280556 141 1e-28
seq281289 113 7e-20
seq218924 107 3e-18
seq281664 102 1e-16
seq126021 102 1e-16
seq279770 100 4e-16
seq21568 100 4e-16
>seq280556
Length=777
Score = 141 bits (156), Expect = 1e-28
Identities = 160/212 (75%), Gaps = 2/212 (1%)
Strand=Plus/Minus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
||||||||| ||| | || || || || |||||||| || || || ||||| || |||
Sbjct 762 AATGCAAATTTTTGTGAAGACCTTAACAGGAAAAACAATCACTTTGGAAGTTGAGAGTTC 703
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
|||| |||| ||||| ||| ||| || |||||||||||||| || || ||||| ||
Sbjct 702 AGATACTATTGATAACGTTAAAGCTAAGATCCAAGATAAAGAAGGGATCCCACCAGACCA 643
Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001
|||||| || |||| || || ||||| | |||||| ||| |||||| | ||||||||
Sbjct 642 ACAAAGGTTAATTTTCGCTGGGAAGCAATTGGAAGATGGCAGGACTTTAGCCGATTATAA 583
Query 156002 TATATCCAAA-GAGGCGACGCTTCATTTAGTG 156032
|| || ||| || |||| ||||| || |||
Sbjct 582 CAT-TCAAAAGGAATCGACACTTCACTTGGTG 552
Score = 84.2 bits (92), Expect = 3e-11
Identities = 106/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||||||| | || || || || ||||| || || ||||||||||| || ||
Sbjct 533 ATGCAAATATTTGTGAAGACCTTAACAGGAAAGACCATCACATTAGAAGTTGAGAGCTCA 474
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | ||| || ||||| |||||| || || || || || || ||||| || ||
Sbjct 473 GACACTATCGACAATGTGAAGGCTAAAATCCAGGACAAGGAGGGTATTCCTCCTGACCAG 414
Query 155943 CAAAGATTGATTTATGCCGGTAAGCA 155968
|||||| |||||| || || |||||
Sbjct 413 CAAAGACTGATTTTCGCTGGGAAGCA 388
>seq281289
Length=787
Score = 113 bits (124), Expect = 7e-20
Identities = 151/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||| ||| | ||||| | || || ||||| || || | || || ||| ||||
Sbjct 326 ATGCAAATCTTTGTGAAAACTCTCACCGGCAAAACAATAACCCTTGAGGTGGAAAGTTCT 385
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| |||| || ||||| ||||| || |||||||| || || |||||||| ||
Sbjct 386 GATACTATTGACAATGTGAAGGCCAAAATTCAGGATAAAGAGGGAATCCCTCCAGACCAG 445
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
||||| | |||| ||| || ||||||||||| ||| |||| | | ||||||||
Sbjct 446 CAAAGGCTTATTTTTGCTGGAAAGCAGCTCGAGGATGGTCGAACCCTCGCCGATTATAAC 505
Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTG 156032
||| ||||| | || ||||| || |||
Sbjct 506 ATACAAAAAGAATCAACCCTTCACTTGGTG 535
Score = 91.5 bits (100), Expect = 2e-13
Identities = 130/183 (71%), Gaps = 0/183 (0%)
Strand=Plus/Plus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
||||||||| || | ||||| | ||||| ||||| || || ||||| || ||| ||
Sbjct 553 AATGCAAATCTTCGTGAAAACCCTCACTGGTAAAACCATCACCTTAGAGGTGGAAAGCTC 612
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
||||| || || ||||| ||| || ||||||||||| || || || || || ||
Sbjct 613 TGATACCATCGATAATGTGAAGGCTAAGATCCAAGATAAAGAGGGAATCCCCCCTGACCA 672
Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001
|| ||| | |||| || ||||| || || |||||| | | ||||| | || || ||
Sbjct 673 GCAGAGACTAATTTTCGCTGGTAAACAACTTGAAGATGGCCGCACTTTGGCGGACTACAA 732
Query 156002 TAT 156004
|||
Sbjct 733 TAT 735
>seq218924
Length=406
Score = 107 bits (118), Expect = 3e-18
Identities = 116/154 (75%), Gaps = 0/154 (0%)
Strand=Plus/Plus
Query 18147 AATATAATAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTAC 18206
|||| || ||||| ||||||||| || | ||||||||||| || || || || ||
Sbjct 87 AATACAACAAACAAGCAAAATCACAATGAAGCCCTTCATCTCTTGAAATCAACTCATTTG 146
Query 18207 TAAACGTTAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTAC 18266
|||||||| || ||||||| || | |||||||| ||| || || || ||||||||
Sbjct 147 AGAACGTTAATCCAGGCATTAGCCCACGTTTTTTTAACCAGAAAATAGAGCAGAAACTAC 206
Query 18267 TAGAAAAGAATATACCCTCAACGCACGCGAACGC 18300
|| ||||| || |||||||| || ||||||||
Sbjct 207 CTGAGAAGAAAATTCCCTCAACACAAGCGAACGC 240
>seq281664
Length=792
Score = 102 bits (112), Expect = 1e-16
Identities = 116/156 (74%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || || |||| || ||||||||||| || || || | || ||||| |||
Sbjct 548 ATGCAGATCTTCGTTAAGACTTTGACTGGAAAGACCATCACCCTCGAGGTCGAGAGCTCT 489
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| || |||||||| ||||| || || || |||||||| || ||||| ||
Sbjct 488 GATACCATCGACAACGTGAAGGCAAAAATTCAGGACAAGGAAGGCATCCCCCCAGACCAG 429
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978
||||||||||| | |||||| |||||||| || |||
Sbjct 428 CAAAGATTGATCTTTGCCGGAAAGCAGCTGGAGGAT 393
>seq126021
Length=250
Score = 102 bits (112), Expect = 1e-16
Identities = 147/205 (72%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
||||||||| || | ||||| | || || || ||||||||| ||||||| ||| ||
Sbjct 16 AATGCAAATTTTCGTCAAAACGCTCACGGGGAAGACTATTACACTAGAAGTTGAAAGCTC 75
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
||| | || || || ||| ||| || ||||| || ||||| || || || || ||
Sbjct 76 TGACACAATCGACAATGTCAAAGCTAAGATTCAAGACAAGGAAGGTATTCCCCCGGATCA 135
Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001
||||| ||||| | ||| || ||||||||||||||| | || || | ||||| ||
Sbjct 136 GCAAAGGTTGATCTTTGCAGGCAAGCAGCTCGAAGATGGTCGTACACTAGCCGATTACAA 195
Query 156002 TATATCCAAA-GAGGCGACGCTTCA 156025
|| || ||| ||| | || |||||
Sbjct 196 CAT-TCAAAAGGAGTCCACTCTTCA 219
>seq279770
Length=767
Score = 100 bits (110), Expect = 4e-16
Identities = 115/155 (74%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||||||| | || || | ||||| ||||| ||||| | || || ||| ||||
Sbjct 410 ATGCAAATATTTGTGAAGACCCTTACTGGCAAAACCATTACTCTTGAGGTGGAAAGTTCT 469
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| ||| || || || |||||| ||||| || || || || || || || |||
Sbjct 470 GATACAATTGACAATGTCAAGGCTAAAATCCAAGACAAGGAGGGTATCCCACCTGATCAA 529
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGA 155977
|| ||| |||||| ||| ||||||||||| || ||
Sbjct 530 CAGAGACTGATTTTTGCTGGTAAGCAGCTTGAGGA 564
>seq21568
Length=652
Score = 100 bits (110), Expect = 4e-16
Identities = 151/213 (71%), Gaps = 4/213 (2%)
Strand=Plus/Minus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
|||||| || || | || ||||||||||| || || || || || ||||| ||| |||
Sbjct 538 AATGCAGATTTTCGTGAAGACATTGACTGGCAAGACCATCACTTTGGAAGTAGAAAGTTC 479
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
|| | || || ||||| | || || ||||| ||||| || || || || || ||
Sbjct 478 CGACACCATCGACAATGTGAAGACAAAGATTCAAGACAAAGAGGGAATCCCACCTGACCA 419
Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001
|| || |||| | ||| || ||||| || |||||| ||||||| || ||||||| |
Sbjct 418 GCAGAGGCTGATCTTTGCAGGCAAGCAACTGGAAGATGGCAGAACTCTAGCAGATTACA- 360
Query 156002 TATATCCAAA--GAGGCGACGCTTCATTTAGTG 156032
| ||||||| || | || || ||||| |||
Sbjct 359 -ACATCCAAAAGGAATCAACTCTGCATTTGGTG 328
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 729080713379200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |