Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq280556 125 1e-23 seq281289 123 5e-23 seq279770 118 2e-21 seq277496 93.3 8e-14 seq21568 91.5 3e-13 seq230622 84.2 4e-11 >seq280556 Length=777 Score = 125 bits (138), Expect = 1e-23 Identities = 143/191 (75%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 192347 CTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGA 192406 |||| || || |||||||| | ||| || | |||| |||||||| || ||||| || | Sbjct 573 CTTTTGA-ATGTTATAATCGGCTAAAGTCCTGCCATCTTCCAATTGCTTCCCAGCGAAAA 631 Query 192407 TTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAG 192466 |||| || ||||| || ||||| || |||||||||||||| || ||| ||| || ||| Sbjct 632 TTAACCTTTGTTGGTCTGGTGGGATCCCTTCTTTATCTTGGATCTTAGCTTTAACGTTAT 691 Query 192467 TTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAA 192526 |||| |||||| || ||||| | ||| || ||||| || ||||| || || | || Sbjct 692 CAATAGTATCTGAACTCTCAACTTCCAAAGTGATTGTTTTTCCTGTTAAGGTCTTCACAA 751 Query 192527 ATATCTGCATT 192537 | || |||||| Sbjct 752 AAATTTGCATT 762 >seq281289 Length=787 Score = 123 bits (136), Expect = 5e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | |||||| | || ||||| || || | || || ||||| || || Sbjct 783 ATTCCACCACGAAGACGGAGCACCAAATGCAATGTTGATTCCTTCTGAATATTGTAGTCC 724 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || || |||| || | |||||||||||| || |||| |||||| || ||||| Sbjct 723 GCCAAAGTGCGGCCATCTTCAAGTTGTTTACCAGCGAAAATTAGTCTCTGCTGGTCAGGG 664 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| ||||||||||| || ||| || |||||| || | ||| || ||| Sbjct 663 GGGATTCCCTCTTTATCTTGGATCTTAGCCTTCACATTATCGATGGTATCAGAGCTTTCC 604 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || |||| || |||||||||||||| | ||||| | || || |||||| Sbjct 603 ACCTCTAAGGTGATGGTTTTACCAGTGAGGGTTTTCACGAAGATTTGCATT 553 >seq279770 Length=767 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| || | |||||| | || ||||| | |||| || || ||||| || || Sbjct 639 ATACCCCCACGAAGACGAAGAACCAAATGCAGGGTAGATTCCTTCTGAATATTGTAGTCG 580 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | ||||| | || || | || ||||||||||| || | |||||||||||||||| Sbjct 579 GCGAGAGTTCGACCGTCCTCAAGCTGCTTACCAGCAAAAATCAGTCTCTGTTGATCAGGT 520 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || ||||| |||||| || ||||| || | ||| || ||| Sbjct 519 GGGATACCCTCCTTGTCTTGGATTTTAGCCTTGACATTGTCAATTGTATCAGAACTTTCC 460 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || |||||||||||||| ||||| | || || | |||||| ||||| Sbjct 459 ACCTCAAGAGTAATGGTTTTGCCAGTAAGGGTCTTCACAAATATTTGCAT 410 Score = 102 bits (112), Expect = 2e-16 Identities = 167/241 (69%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||| | | || ||||| | |||| || || |||||| ||||| Sbjct 411 ATCCCACCGCGAAGTCTAAGCACCAAATGGAGTGTAGATTCCTTCTGGATATTGTAATCG 352 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | ||||| | || || | ||| |||||||||||||| | |||||||| || ||| Sbjct 351 GCAAGCGTTCGGCCGTCCTCAAGTTGCTTACCAGCAAAGATAAGCCTCTGTTGGTCGGGT 292 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || ||||||||||| || || |||||||| || | ||||| ||| Sbjct 291 GGAATGCCCTCTTTATCTTGAATCTTTGCCTTTACATTGTCAATTGTGTCTGAGCTTTCC 232 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTTATTAGAA 192546 || || || || || ||||| ||||| | ||||| | || || ||||| | | |||| Sbjct 231 ACCTCGAGGGTGATTGTTTTGCCAGTGAGGGTTTTTACGAAGATTTGCATCTGTTAAGAA 172 Query 192547 A 192547 | Sbjct 171 A 171 >seq277496 Length=739 Score = 93.3 bits (102), Expect = 8e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 192304 ATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAA 192363 ||| |||| || ||||| | || || || || | || | ||| || ||| |||||| Sbjct 282 ATAGTACCTCCCCTAAGCCTCAAGACCAAGTGAAGGGTTGACTCCTTTTGGATGTTATAA 223 Query 192364 TCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCA 192423 || | | ||||| |||| |||||||| ||||||||||| ||||||||||| || ||| Sbjct 222 TCTGCAAGCGTTCGACCATCTTCCAATTGCTTACCAGCAAAAATTAATCTCTGCTGGTCA 163 Query 192424 GGTGGTATTCCTTCTTTATCTTGTAT 192449 || || || ||||| || || || || Sbjct 162 GGAGGAATACCTTCCTTGTCCTGCAT 137 >seq21568 Length=652 Score = 91.5 bits (100), Expect = 3e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 ||||| ||||||| || || || |||| ||||||||||| ||||||||||| |||||| Sbjct 134 ATATTGTAATCAGCCAAAGTCCGACCATCCTCCAATTGTTTTCCAGCAAAGATCAATCTC 193 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTT 192452 |||||||| || || || || || || ||||| || || Sbjct 194 TGTTGATCTGGAGGAATCCCCTCCTTGTCTTGAATCTT 231 >seq230622 Length=445 Score = 84.2 bits (92), Expect = 4e-11 Identities = 169/251 (67%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 50118 TACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTCT 50177 ||||| ||||| || | | ||| || || ||||||||| |||||| ||| ||||| Sbjct 8 TACATCTCAGAGTGGATATTTTCAATGGCGATTTGAAATCCATAAAAGGCTCTGGCTTCA 67 Query 50178 GAATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGAT 50237 || |||||||| | ||| ||| || | | |||||| | ||||| ||||||||| Sbjct 68 GAGACTTGAACTTCTTTCATGAAACGTCCAGCAAGATTCTCCAAAACAATGCCATCAGAT 127 Query 50238 GCTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCC 50297 || || ||||| || | |||| | || || || || || | |||| ||| Sbjct 128 GCAGCAAAGAAGGCAAGCACGTGAGTGATGAAGTGCTTCTCGTCGGGAGTTAAGGACTCC 187 Query 50298 CAAGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATGCTACGGAT 50357 ||| |||||| | ||| | ||| ||||| || ||||| || || ||| ||| Sbjct 188 CAATGGCGAAGATCCTGTGAGAGATCGACTTCCTCGGCGGTCCAGAAGGAAGCTTCGGCC 247 Query 50358 TTTTTATACAT 50368 || || ||||| Sbjct 248 TTCTTGTACAT 258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 980631424021200