Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19]
305,112 sequences; 176,727,258 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq280556 125 1e-23
seq281289 123 5e-23
seq279770 118 2e-21
seq277496 93.3 8e-14
seq21568 91.5 3e-13
seq230622 84.2 4e-11
>seq280556
Length=777
Score = 125 bits (138), Expect = 1e-23
Identities = 143/191 (75%), Gaps = 1/191 (1%)
Strand=Plus/Plus
Query 192347 CTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGA 192406
|||| || || |||||||| | ||| || | |||| |||||||| || ||||| || |
Sbjct 573 CTTTTGA-ATGTTATAATCGGCTAAAGTCCTGCCATCTTCCAATTGCTTCCCAGCGAAAA 631
Query 192407 TTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAG 192466
|||| || ||||| || ||||| || |||||||||||||| || ||| ||| || |||
Sbjct 632 TTAACCTTTGTTGGTCTGGTGGGATCCCTTCTTTATCTTGGATCTTAGCTTTAACGTTAT 691
Query 192467 TTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAA 192526
|||| |||||| || ||||| | ||| || ||||| || ||||| || || | ||
Sbjct 692 CAATAGTATCTGAACTCTCAACTTCCAAAGTGATTGTTTTTCCTGTTAAGGTCTTCACAA 751
Query 192527 ATATCTGCATT 192537
| || ||||||
Sbjct 752 AAATTTGCATT 762
>seq281289
Length=787
Score = 123 bits (136), Expect = 5e-23
Identities = 166/231 (72%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|| ||||| | |||||| | || ||||| || || | || || ||||| || ||
Sbjct 783 ATTCCACCACGAAGACGGAGCACCAAATGCAATGTTGATTCCTTCTGAATATTGTAGTCC 724
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
| || || || |||| || | |||||||||||| || |||| |||||| || |||||
Sbjct 723 GCCAAAGTGCGGCCATCTTCAAGTTGTTTACCAGCGAAAATTAGTCTCTGCTGGTCAGGG 664
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| ||||| ||||||||||| || ||| || |||||| || | ||| || |||
Sbjct 663 GGGATTCCCTCTTTATCTTGGATCTTAGCCTTCACATTATCGATGGTATCAGAGCTTTCC 604
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537
|| |||| || |||||||||||||| | ||||| | || || ||||||
Sbjct 603 ACCTCTAAGGTGATGGTTTTACCAGTGAGGGTTTTCACGAAGATTTGCATT 553
>seq279770
Length=767
Score = 118 bits (130), Expect = 2e-21
Identities = 164/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
||||| || | |||||| | || ||||| | |||| || || ||||| || ||
Sbjct 639 ATACCCCCACGAAGACGAAGAACCAAATGCAGGGTAGATTCCTTCTGAATATTGTAGTCG 580
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
| | ||||| | || || | || ||||||||||| || | ||||||||||||||||
Sbjct 579 GCGAGAGTTCGACCGTCCTCAAGCTGCTTACCAGCAAAAATCAGTCTCTGTTGATCAGGT 520
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || || || || ||||| |||||| || ||||| || | ||| || |||
Sbjct 519 GGGATACCCTCCTTGTCTTGGATTTTAGCCTTGACATTGTCAATTGTATCAGAACTTTCC 460
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| || |||||||||||||| ||||| | || || | |||||| |||||
Sbjct 459 ACCTCAAGAGTAATGGTTTTGCCAGTAAGGGTCTTCACAAATATTTGCAT 410
Score = 102 bits (112), Expect = 2e-16
Identities = 167/241 (69%), Gaps = 0/241 (0%)
Strand=Plus/Minus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|| ||||| | ||| | | || ||||| | |||| || || |||||| |||||
Sbjct 411 ATCCCACCGCGAAGTCTAAGCACCAAATGGAGTGTAGATTCCTTCTGGATATTGTAATCG 352
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
| | ||||| | || || | ||| |||||||||||||| | |||||||| || |||
Sbjct 351 GCAAGCGTTCGGCCGTCCTCAAGTTGCTTACCAGCAAAGATAAGCCTCTGTTGGTCGGGT 292
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || || ||||||||||| || || |||||||| || | ||||| |||
Sbjct 291 GGAATGCCCTCTTTATCTTGAATCTTTGCCTTTACATTGTCAATTGTGTCTGAGCTTTCC 232
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTTATTAGAA 192546
|| || || || || ||||| ||||| | ||||| | || || ||||| | | ||||
Sbjct 231 ACCTCGAGGGTGATTGTTTTGCCAGTGAGGGTTTTTACGAAGATTTGCATCTGTTAAGAA 172
Query 192547 A 192547
|
Sbjct 171 A 171
>seq277496
Length=739
Score = 93.3 bits (102), Expect = 8e-14
Identities = 108/146 (74%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 192304 ATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAA 192363
||| |||| || ||||| | || || || || | || | ||| || ||| ||||||
Sbjct 282 ATAGTACCTCCCCTAAGCCTCAAGACCAAGTGAAGGGTTGACTCCTTTTGGATGTTATAA 223
Query 192364 TCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCA 192423
|| | | ||||| |||| |||||||| ||||||||||| ||||||||||| || |||
Sbjct 222 TCTGCAAGCGTTCGACCATCTTCCAATTGCTTACCAGCAAAAATTAATCTCTGCTGGTCA 163
Query 192424 GGTGGTATTCCTTCTTTATCTTGTAT 192449
|| || || ||||| || || || ||
Sbjct 162 GGAGGAATACCTTCCTTGTCCTGCAT 137
>seq21568
Length=652
Score = 91.5 bits (100), Expect = 3e-13
Identities = 79/98 (81%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414
||||| ||||||| || || || |||| ||||||||||| ||||||||||| ||||||
Sbjct 134 ATATTGTAATCAGCCAAAGTCCGACCATCCTCCAATTGTTTTCCAGCAAAGATCAATCTC 193
Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTT 192452
|||||||| || || || || || || ||||| || ||
Sbjct 194 TGTTGATCTGGAGGAATCCCCTCCTTGTCTTGAATCTT 231
>seq230622
Length=445
Score = 84.2 bits (92), Expect = 4e-11
Identities = 169/251 (67%), Gaps = 0/251 (0%)
Strand=Plus/Plus
Query 50118 TACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTCT 50177
||||| ||||| || | | ||| || || ||||||||| |||||| ||| |||||
Sbjct 8 TACATCTCAGAGTGGATATTTTCAATGGCGATTTGAAATCCATAAAAGGCTCTGGCTTCA 67
Query 50178 GAATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGAT 50237
|| |||||||| | ||| ||| || | | |||||| | ||||| |||||||||
Sbjct 68 GAGACTTGAACTTCTTTCATGAAACGTCCAGCAAGATTCTCCAAAACAATGCCATCAGAT 127
Query 50238 GCTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCC 50297
|| || ||||| || | |||| | || || || || || | |||| |||
Sbjct 128 GCAGCAAAGAAGGCAAGCACGTGAGTGATGAAGTGCTTCTCGTCGGGAGTTAAGGACTCC 187
Query 50298 CAAGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATGCTACGGAT 50357
||| |||||| | ||| | ||| ||||| || ||||| || || ||| |||
Sbjct 188 CAATGGCGAAGATCCTGTGAGAGATCGACTTCCTCGGCGGTCCAGAAGGAAGCTTCGGCC 247
Query 50358 TTTTTATACAT 50368
|| || |||||
Sbjct 248 TTCTTGTACAT 258
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 980631424021200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |