Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19]
305,112 sequences; 176,727,258 total letters
Query= NC_021249.1
Length=282895
Score E
Sequences producing significant alignments: (Bits) Value
seq281289 138 2e-27
seq280556 129 1e-24
seq273947 125 1e-23
seq279770 122 2e-22
seq21568 120 5e-22
seq277496 96.9 6e-15
seq281664 91.5 3e-13
>seq281289
Length=787
Score = 138 bits (152), Expect = 2e-27
Identities = 169/231 (73%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|| ||||| | ||| || | || ||||| || || | || || |||||| || ||
Sbjct 783 ATTCCACCACGAAGACGGAGCACCAAATGCAATGTTGATTCCTTCTGAATATTGTAGTCC 724
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
| |||| || | || || | |||||||||||| ||||||| |||||| ||||||||
Sbjct 723 GCCAAAGTGCGGCCATCTTCAAGTTGTTTACCAGCGAAAATTAGTCTCTGCTGGTCAGGG 664
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| ||||| ||||||||||| || ||| || |||||| || ||||| || |||
Sbjct 663 GGGATTCCCTCTTTATCTTGGATCTTAGCCTTCACATTATCGATGGTATCAGAGCTTTCC 604
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070
|| |||| || |||||||||||||| | ||||| | ||| || ||||||
Sbjct 603 ACCTCTAAGGTGATGGTTTTACCAGTGAGGGTTTTCACGAAGATTTGCATT 553
>seq280556
Length=777
Score = 129 bits (142), Expect = 1e-24
Identities = 139/184 (76%), Gaps = 0/184 (0%)
Strand=Plus/Plus
Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946
||| |||||||| | ||||| | | || |||||||| || ||||| |||||||| ||
Sbjct 579 AATGTTATAATCGGCTAAAGTCCTGCCATCTTCCAATTGCTTCCCAGCGAAAATTAACCT 638
Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006
|||||||| ||||| || |||||||||||||| || ||| ||| || ||| |||||
Sbjct 639 TTGTTGGTCTGGTGGGATCCCTTCTTTATCTTGGATCTTAGCTTTAACGTTATCAATAGT 698
Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066
|||||| || ||||| | ||| || ||||| || ||||| || || | || || ||
Sbjct 699 ATCTGAACTCTCAACTTCCAAAGTGATTGTTTTTCCTGTTAAGGTCTTCACAAAAATTTG 758
Query 172067 CATT 172070
||||
Sbjct 759 CATT 762
>seq273947
Length=700
Score = 125 bits (138), Expect = 1e-23
Identities = 297/440 (68%), Gaps = 9/440 (2%)
Strand=Plus/Minus
Query 38832 TTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAAA 38891
||||| ||||| |||| ||||||| || || || || || |||| ||||| || ||
Sbjct 600 TTTTGATATTCCCCAACTCTTTTTTCAAAGAAATTGGTCTTCCCTTGCAATGAAATCAAT 541
Query 38892 TTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATC--AATACATATA 38949
| ||| ||||||||||||||| ||||| | ||||| | | || | || | |
Sbjct 540 TCCATCCAATCAAATGGATTTTGAACATTAT-AGATTTTGC-CATACCCTAAAGCTCCAA 483
Query 38950 ATAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATA 39009
|||||||||||||||||||||| ||||| ||| || || | |||||| || | ||
Sbjct 482 CCAATCTATCGGCCACAAATTCAATGTATTGGCTCATCAAATCGCCATTCATTCCAACTA 423
Query 39010 ATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaatta 39069
|| || || |||||| | ||||| | ||||| ||||| |||| ||| |
Sbjct 422 GAGCAACAGGCAAGGCATCACACACGAATTCCCTCTCTATATCTACGGCTTCGGTAACAA 363
Query 39070 tcataattatattattttttgataatttatatttaatatgattcgcatataGTAAACATG 39129
|| | | | ||| | | ||| | | | | || | ||| | ||||| |
Sbjct 362 TCTCATTCACTCGATTCTCACTCAGTTTCTTCCTCA-ACAAT--GAATACAACAAACAAG 306
Query 39130 CAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTG 39189
||||||| ||| | ||| ||||| | || || || ||||| || || | ||| |
Sbjct 305 CAAAATCGCAATGAAGACCCTCGTCTCGTGAAATCAACTCATTTGAGAATGTGAGTCCAG 246
Query 39190 GCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCA-AAACTACTAGAAAAGAATATA 39248
|||||||||| | ||||| | ||| || || || ||| || |||| || ||||| ||
Sbjct 245 GCATTAATCCACGTTTTTTCAACCAGAAAATGGA-GCAGAAGCTACCTGAGAAGAAGATT 187
Query 39249 CCCTCCACACACGCAAATGC 39268
|| || ||||| ||||||||
Sbjct 186 CCTTCAACACAAGCAAATGC 167
>seq279770
Length=767
Score = 122 bits (134), Expect = 2e-22
Identities = 165/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
||||| || | ||| || | || ||||| | |||| || || |||||| || ||
Sbjct 639 ATACCCCCACGAAGACGAAGAACCAAATGCAGGGTAGATTCCTTCTGAATATTGTAGTCG 580
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
| | || ||| |||| || | || |||||||||||||| | ||||||||| ||||||
Sbjct 579 GCGAGAGTTCGACCGTCCTCAAGCTGCTTACCAGCAAAAATCAGTCTCTGTTGATCAGGT 520
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| || || || || ||||| |||||| || ||||| || ||||| || |||
Sbjct 519 GGGATACCCTCCTTGTCTTGGATTTTAGCCTTGACATTGTCAATTGTATCAGAACTTTCC 460
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
|| || |||||||||||||| ||||| | || || | ||||| |||||
Sbjct 459 ACCTCAAGAGTAATGGTTTTGCCAGTAAGGGTCTTCACAAATATTTGCAT 410
Score = 109 bits (120), Expect = 1e-18
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|| ||||| | ||||| | || ||||| | |||| || || ||||| |||||
Sbjct 411 ATCCCACCGCGAAGTCTAAGCACCAAATGGAGTGTAGATTCCTTCTGGATATTGTAATCG 352
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
| | | ||| |||| || | ||| ||||||||||| || | ||||||||||| |||
Sbjct 351 GCAAGCGTTCGGCCGTCCTCAAGTTGCTTACCAGCAAAGATAAGCCTCTGTTGGTCGGGT 292
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| || || ||||||||||| || || |||||||| || || ||||| |||
Sbjct 291 GGAATGCCCTCTTTATCTTGAATCTTTGCCTTTACATTGTCAATTGTGTCTGAGCTTTCC 232
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
|| || || || || ||||| ||||| | ||||| | ||| || |||||
Sbjct 231 ACCTCGAGGGTGATTGTTTTGCCAGTGAGGGTTTTTACGAAGATTTGCAT 182
Score = 96.9 bits (106), Expect = 6e-15
Identities = 98/128 (77%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 171942 AATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTT 172001
|| ||||||||||||||||| || || || |||||||| || ||| ||| ||||||
Sbjct 765 AACCTCTGTTGGTCAGGTGGAATGCCCTCCTTATCTTGAATCTTAGCTTTCACATTATCA 706
Query 172002 ATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAAT 172061
|| ||||| || || ||||| | |||||| ||||| ||||| || ||||| | ||
Sbjct 705 ATTGTATCAGAGCTCTCCACTTCCAAAGTAATTGTTTTGCCAGTCAAGGTTTTCACAAAA 646
Query 172062 ATCTGCAT 172069
||||||||
Sbjct 645 ATCTGCAT 638
>seq21568
Length=652
Score = 120 bits (132), Expect = 5e-22
Identities = 165/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|| ||||| | ||||| | || ||||| | ||| | || || || || ||||||
Sbjct 308 ATCCCACCACGCAGTCGAAGCACCAAATGCAGAGTTGATTCCTTTTGGATGTTGTAATCT 367
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
| || || || | || |||| ||| || || ||||| || | ||||| |||||||||
Sbjct 368 GCTAGAGTTCTGCCATCTTCCAGTTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGT 427
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| ||||| ||||| ||||| || || | || ||||| || || || || ||||
Sbjct 428 GGGATTCCCTCTTTGTCTTGAATCTTTGTCTTCACATTGTCGATGGTGTCGGAACTTTCT 487
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070
||||| | ||| ||||| || ||||| ||||| || | ||| |||||||||
Sbjct 488 ACTTCCAAAGTGATGGTCTTGCCAGTCAATGTCTTCACGAAAATCTGCATT 538
>seq277496
Length=739
Score = 96.9 bits (106), Expect = 6e-15
Identities = 110/148 (74%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 171835 TCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTAT 171894
||||| |||| || ||||| | || || || || | || | ||| || || ||||
Sbjct 284 TCATAGTACCTCCCCTAAGCCTCAAGACCAAGTGAAGGGTTGACTCCTTTTGGATGTTAT 225
Query 171895 AATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGT 171954
|||||| | | ||| | || |||||||| ||||||||||||||||||||||| ||||
Sbjct 224 AATCTGCAAGCGTTCGACCATCTTCCAATTGCTTACCAGCAAAAATTAATCTCTGCTGGT 165
Query 171955 CAGGTGGTATTCCTTCTTTATCTTGTAT 171982
|||| || || ||||| || || || ||
Sbjct 164 CAGGAGGAATACCTTCCTTGTCCTGCAT 137
>seq281664
Length=792
Score = 91.5 bits (100), Expect = 3e-13
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|||||||| | || || || || | ||| | ||||| ||| || || || || |||
Sbjct 547 ATACCACCACGGAGACGCAAGACAAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCT 606
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
| | || ||| |||| ||||| ||||| ||||| || || | |||||||||||| ||
Sbjct 607 GCAAGAGTTCGGCCGTCCTCCAACTGTTTTCCAGCGAAGATGAGTCTCTGTTGGTCTGGG 666
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| || ||||| || || || || || || || || || || ||||| || ||
Sbjct 667 GGGATACCTTCCTTGTCCTGAATCTTGGCCTTCACGTTGTCAATTGTGTCTGAAGACTCA 726
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
|| || | || ||||| || || || | ||||| | || || |||||
Sbjct 727 ACCTCCAAGGTGATGGTCTTTCCGGTGAGAGTTTTGACAAAAATTTGCAT 776
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 901683901809600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |