Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19]
305,112 sequences; 176,727,258 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq51527 116 1e-20
seq42289 114 4e-20
seq49096 93.3 1e-13
seq302384 87.8 5e-12
seq230622 84.2 6e-11
>seq51527
Length=2623
Score = 116 bits (128), Expect = 1e-20
Identities = 273/409 (67%), Gaps = 16/409 (4%)
Strand=Plus/Plus
Query 288938 TAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAAC 288997
|||| |||||||| || | | ||||| ||||| || || |||||||| ||| |
Sbjct 2226 TAAAACCATCCATTTCAGTGAGCAACTGATTTAGTGTCTGCTCTCTTTCATCGTTT---C 2282
Query 288998 CTCTTGAATCACCCGAATCGCT---CCttt--ttttACCAACAGCATCAATTTCGTCAAT 289052
||| |||| ||| || ||| | || | |||||||||||||| || |||||
Sbjct 2283 CTC------CACC--AATGCCTGTGCCTCTCATTCTCCCAACAGCATCAATCTCATCAAT 2334
Query 289053 GAAAATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGC 289112
|||| | || || |||||| | | || | ||||| ||||| || | || ||
Sbjct 2335 AAAAACTAAGCATGGGGAATTTGCTTTTGCTTTGTTGAATAAATCTCTCACTCTTGAGGC 2394
Query 289113 TCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATT 289172
|||| ||||| |||| |||| || |||||| | || | | ||| | ||
Sbjct 2395 CCCAACCCCAACGAACATCTCTATGAACTCAGAACCAGAGAGAGAGAAGAAAGGAACTCC 2454
Query 289173 TGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAA 289232
||||| ||||| | || || |||| | ||||| |||||||| ||||| || ||||
Sbjct 2455 AGCTTCCCCTGCAATGGCTCTAGCCAACAAGGTCTTTCCTGTTCCTGGTGGCCCAACTAA 2514
Query 289233 TAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAA 289292
||||| || ||||||| | |||| ||| | | | | ||||| || |||| ||||
Sbjct 2515 GAGAACCCCTTTTGGTATTCTTGCTCCAACTGCTGAAAACTTCTCTGGAGTCTTCAAAAG 2574
Query 289293 TTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACA 289341
|| ||||| || | | || | ||||| |||||| || ||||||
Sbjct 2575 CTCCACAATCTCTTGGAAATCTTGCTTTGCTTCATCAACCCCAGCTACA 2623
>seq42289
Length=1066
Score = 114 bits (126), Expect = 4e-20
Identities = 279/416 (67%), Gaps = 10/416 (2%)
Strand=Plus/Minus
Query 288939 AAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACC 288998
||| |||||||| || || | ||||| | ||||| || || ||||||||| |||
Sbjct 1039 AAACCCATCCATCTCAGTCAATAGCTGATTGATAGTTTGCTCTCTCTCATCATTTCCACC 980
Query 288999 TCTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAAT 289058
|| | ||| | | ||| | | | || || |||||||| || |||||||| |
Sbjct 979 TCC---AAGACCTGCCCCTCTC---TGTCTCCCCACGGCATCAATCTCATCAATGAACAC 926
Query 289059 CACACACGGAGAATTTTGTCTCGCAATTG-CAAATAATTCTCTTACACGGGATGCTCCAA 289117
| || |||| ||| | || | ||| |||| || || | ||| | || || || |
Sbjct 925 AATGCAAGGAGC-TTTGGACTTGGCTTTGTCAAACAAGTCCCGTACTCTTGAAGCACCCA 867
Query 289118 GACCAACATACATTTCTACAAATTCAGAAGCGG-ATACTTGAATGAATGTTACATTTGCT 289176
||||||| ||| ||||||||| || ||||| | | || ||| ||||| || |||
Sbjct 866 CACCAACAAACAATTCTACAAACTCTGAAGCAGCACACGAGAA-GAATGGCACCCCAGCT 808
Query 289177 TCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGA 289236
|| || || || |||| |||||||| || || || || || || ||||| | | |||
Sbjct 807 TCCCCGGCCACGGCCCGGGCCAGAAGAGTTTTTCCGGTACCGGGCGGTCCAACAAGGAGA 748
Query 289237 ACTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCT 289296
|| ||||| | ||| || ||| || | || || |||||| | || || || ||
Sbjct 747 CACCCTTTTGGGATTTTAGCTCCAAGAGCTGTGTACTTATCAGGGTTTTTCAAGAAATCA 688
Query 289297 ACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352
|| | ||| | | |||| || || | ||| ||| || ||||||||||||||
Sbjct 687 ACCACTTCTTGCAATTCAAGCTTGGCTTGGTCAGCTCCAGCAACATCAGCAAAAGT 632
>seq49096
Length=2475
Score = 93.3 bits (102), Expect = 1e-13
Identities = 178/257 (69%), Gaps = 4/257 (2%)
Strand=Plus/Plus
Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148
||| || | ||| || | |||| ||||| ||||||| |||| || | || || ||| |
Sbjct 484 AAACAAGTTTCTAACCCTCGATGGTCCAACACCAACAAACATCTCCATGAAATCTGAACC 543
Query 289149 GGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCT 289207
|||| | || | ||| | ||| || ||| || || ||| | ||||| | ||||
Sbjct 544 AGATA-TAGACAGGAAAGGCACACCTGATTCACCAGCAGTTGCTTTTGCCAGTAAGGTCT 602
Query 289208 TACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACT 289267
| || || ||||| ||||| | || || | |||||||| | ||| ||||| | ||
Sbjct 603 TTCCAGTACCAGGAGGTCCAACCAAAAGTGCACCCTTTGGAATTTTAGCCCCCA-ATTCT 661
Query 289268 T-ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCA 289326
| |||||| ||| |||| | || | ||||| ||| | ||| | ||||||||||
Sbjct 662 TCATATTTTCTAGGATTCTTGAGGAAGTGTACAAACTCCATGATTTCTTGTTTTGCCTCA 721
Query 289327 TCACATCCTGCTACATC 289343
||||| ||||| |||||
Sbjct 722 TCACAACCTGCAACATC 738
>seq302384
Length=1604
Score = 87.8 bits (96), Expect = 5e-12
Identities = 125/176 (71%), Gaps = 0/176 (0%)
Strand=Plus/Minus
Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544
||||| || | |||||| || ||||||||||| || || || || ||||||||||| ||
Sbjct 318 GCACCATGAGCAATCATGCAGTCACGCTCCATCTCCCCAAATCGGAGACCACCATCACGT 259
Query 251545 GCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGT 251604
| || |||||| ||||| || | ||| || | || |||||| | || ||||
Sbjct 258 GACCGACCCTCAGCAGGTTGTCTAGTAAGGATCTGCACAGGACCCCTTCCACGTGAATGT 199
Query 251605 TGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGAT 251660
|| |||| ||||||||||| || | |||||| | | ||||| | ||| ||
Sbjct 198 ATTTTGTCATCAACCATATGCTTCAGCCTTTGGTAGTAGGTCGGACCAAGGAATAT 143
Score = 87.8 bits (96), Expect = 5e-12
Identities = 127/177 (72%), Gaps = 2/177 (1%)
Strand=Plus/Minus
Query 233272 AGCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCATT 233331
|||||| ||||||||||| || ||||| ||||| || |||| || ||||||||||||
Sbjct 319 AGCACCATGAGCAATCATGCAGTCACGCTCCATCTCCCCAAATCGGAGACCACCATCACG 260
Query 233332 TGACCTACCCTGGACTGTTTGACGAGTTA-AAACAGTTCTTGGACCCTGAGCACGATAAT 233390
||||| ||||| | | ||| | ||| | | | | | |||||| |||| |||
Sbjct 259 TGACCGACCCTCAGCAGGTTGTCTAGTAAGGATCTGCAC-AGGACCCCTTCCACGTGAAT 201
Query 233391 TAATTTTATCTTTAACCATATGCTTCAGTCTCATATAATAACACGGACCAATAAATA 233447
||||| || | ||||||||||||||| || || || |||||||| ||||
Sbjct 200 GTATTTTGTCATCAACCATATGCTTCAGCCTTTGGTAGTAGGTCGGACCAAGGAATA 144
>seq230622
Length=445
Score = 84.2 bits (92), Expect = 6e-11
Identities = 184/276 (67%), Gaps = 0/276 (0%)
Strand=Plus/Minus
Query 133082 ATGTTCCCAATTAAGGACGACGAGATTTGGCAGATGTATAAAAAACAGCAAGATTTATTT 133141
||||| |||||| || || | |||||| ||||||| || || ||| || ||
Sbjct 291 ATGTTTCCAATTCAGTACCCTCAAATTTGGGAGATGTACAAGAAGGCCGAAGCTTCCTTC 232
Query 133142 TGGACTTCAACTGAAGTAGATTTATCCAAAGACCCAGCCCACTGGGAAGCCCTTACTGGG 133201
||||| | ||||| ||| | || | || | ||| ||||| || | |||
Sbjct 231 TGGACCGCCGAGGAAGTCGATCTCTCACAGGATCTTCGCCATTGGGAGTCCTTAACTCCC 172
Query 133202 GATGAAAAACATTTTATTTCTATGATTTTAGCGTTTTTTGCTGCGAGTGATGGTATTGTT 133261
|| || || || || || || | | || || |||||||| |||||| ||||||
Sbjct 171 GACGAGAAGCACTTCATCACTCACGTGCTTGCCTTCTTTGCTGCATCTGATGGCATTGTT 112
Query 133262 CTTGAAAATTTAGGAACACGGTTTATGGGAGAAGTTCAACTGGCCGAAGCCCGTGCCTTT 133321
| || ||| | | ||| || ||| |||||||||| | | |||||| | ||||||
Sbjct 111 TTGGAGAATCTTGCTGGACGTTTCATGAAAGAAGTTCAAGTCTCTGAAGCCAGAGCCTTT 52
Query 133322 TATGGGCTACAGATTGCGATGGAAAATATCCATTCT 133357
||||| | || || || || ||||||||||| |||
Sbjct 51 TATGGATTTCAAATCGCCATTGAAAATATCCACTCT 16
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1466063900726744
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |