Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq51527 116 1e-20 seq42289 114 4e-20 seq49096 93.3 1e-13 seq302384 87.8 5e-12 seq230622 84.2 6e-11 >seq51527 Length=2623 Score = 116 bits (128), Expect = 1e-20 Identities = 273/409 (67%), Gaps = 16/409 (4%) Strand=Plus/Plus Query 288938 TAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAAC 288997 |||| |||||||| || | | ||||| ||||| || || |||||||| ||| | Sbjct 2226 TAAAACCATCCATTTCAGTGAGCAACTGATTTAGTGTCTGCTCTCTTTCATCGTTT---C 2282 Query 288998 CTCTTGAATCACCCGAATCGCT---CCttt--ttttACCAACAGCATCAATTTCGTCAAT 289052 ||| |||| ||| || ||| | || | |||||||||||||| || ||||| Sbjct 2283 CTC------CACC--AATGCCTGTGCCTCTCATTCTCCCAACAGCATCAATCTCATCAAT 2334 Query 289053 GAAAATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGC 289112 |||| | || || |||||| | | || | ||||| ||||| || | || || Sbjct 2335 AAAAACTAAGCATGGGGAATTTGCTTTTGCTTTGTTGAATAAATCTCTCACTCTTGAGGC 2394 Query 289113 TCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATT 289172 |||| ||||| |||| |||| || |||||| | || | | ||| | || Sbjct 2395 CCCAACCCCAACGAACATCTCTATGAACTCAGAACCAGAGAGAGAGAAGAAAGGAACTCC 2454 Query 289173 TGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAA 289232 ||||| ||||| | || || |||| | ||||| |||||||| ||||| || |||| Sbjct 2455 AGCTTCCCCTGCAATGGCTCTAGCCAACAAGGTCTTTCCTGTTCCTGGTGGCCCAACTAA 2514 Query 289233 TAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAA 289292 ||||| || ||||||| | |||| ||| | | | | ||||| || |||| |||| Sbjct 2515 GAGAACCCCTTTTGGTATTCTTGCTCCAACTGCTGAAAACTTCTCTGGAGTCTTCAAAAG 2574 Query 289293 TTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACA 289341 || ||||| || | | || | ||||| |||||| || |||||| Sbjct 2575 CTCCACAATCTCTTGGAAATCTTGCTTTGCTTCATCAACCCCAGCTACA 2623 >seq42289 Length=1066 Score = 114 bits (126), Expect = 4e-20 Identities = 279/416 (67%), Gaps = 10/416 (2%) Strand=Plus/Minus Query 288939 AAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACC 288998 ||| |||||||| || || | ||||| | ||||| || || ||||||||| ||| Sbjct 1039 AAACCCATCCATCTCAGTCAATAGCTGATTGATAGTTTGCTCTCTCTCATCATTTCCACC 980 Query 288999 TCTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAAT 289058 || | ||| | | ||| | | | || || |||||||| || |||||||| | Sbjct 979 TCC---AAGACCTGCCCCTCTC---TGTCTCCCCACGGCATCAATCTCATCAATGAACAC 926 Query 289059 CACACACGGAGAATTTTGTCTCGCAATTG-CAAATAATTCTCTTACACGGGATGCTCCAA 289117 | || |||| ||| | || | ||| |||| || || | ||| | || || || | Sbjct 925 AATGCAAGGAGC-TTTGGACTTGGCTTTGTCAAACAAGTCCCGTACTCTTGAAGCACCCA 867 Query 289118 GACCAACATACATTTCTACAAATTCAGAAGCGG-ATACTTGAATGAATGTTACATTTGCT 289176 ||||||| ||| ||||||||| || ||||| | | || ||| ||||| || ||| Sbjct 866 CACCAACAAACAATTCTACAAACTCTGAAGCAGCACACGAGAA-GAATGGCACCCCAGCT 808 Query 289177 TCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGA 289236 || || || || |||| |||||||| || || || || || || ||||| | | ||| Sbjct 807 TCCCCGGCCACGGCCCGGGCCAGAAGAGTTTTTCCGGTACCGGGCGGTCCAACAAGGAGA 748 Query 289237 ACTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCT 289296 || ||||| | ||| || ||| || | || || |||||| | || || || || Sbjct 747 CACCCTTTTGGGATTTTAGCTCCAAGAGCTGTGTACTTATCAGGGTTTTTCAAGAAATCA 688 Query 289297 ACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 || | ||| | | |||| || || | ||| ||| || |||||||||||||| Sbjct 687 ACCACTTCTTGCAATTCAAGCTTGGCTTGGTCAGCTCCAGCAACATCAGCAAAAGT 632 >seq49096 Length=2475 Score = 93.3 bits (102), Expect = 1e-13 Identities = 178/257 (69%), Gaps = 4/257 (2%) Strand=Plus/Plus Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 ||| || | ||| || | |||| ||||| ||||||| |||| || | || || ||| | Sbjct 484 AAACAAGTTTCTAACCCTCGATGGTCCAACACCAACAAACATCTCCATGAAATCTGAACC 543 Query 289149 GGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCT 289207 |||| | || | ||| | ||| || ||| || || ||| | ||||| | |||| Sbjct 544 AGATA-TAGACAGGAAAGGCACACCTGATTCACCAGCAGTTGCTTTTGCCAGTAAGGTCT 602 Query 289208 TACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACT 289267 | || || ||||| ||||| | || || | |||||||| | ||| ||||| | || Sbjct 603 TTCCAGTACCAGGAGGTCCAACCAAAAGTGCACCCTTTGGAATTTTAGCCCCCA-ATTCT 661 Query 289268 T-ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCA 289326 | |||||| ||| |||| | || | ||||| ||| | ||| | |||||||||| Sbjct 662 TCATATTTTCTAGGATTCTTGAGGAAGTGTACAAACTCCATGATTTCTTGTTTTGCCTCA 721 Query 289327 TCACATCCTGCTACATC 289343 ||||| ||||| ||||| Sbjct 722 TCACAACCTGCAACATC 738 >seq302384 Length=1604 Score = 87.8 bits (96), Expect = 5e-12 Identities = 125/176 (71%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544 ||||| || | |||||| || ||||||||||| || || || || ||||||||||| || Sbjct 318 GCACCATGAGCAATCATGCAGTCACGCTCCATCTCCCCAAATCGGAGACCACCATCACGT 259 Query 251545 GCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGT 251604 | || |||||| ||||| || | ||| || | || |||||| | || |||| Sbjct 258 GACCGACCCTCAGCAGGTTGTCTAGTAAGGATCTGCACAGGACCCCTTCCACGTGAATGT 199 Query 251605 TGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGAT 251660 || |||| ||||||||||| || | |||||| | | ||||| | ||| || Sbjct 198 ATTTTGTCATCAACCATATGCTTCAGCCTTTGGTAGTAGGTCGGACCAAGGAATAT 143 Score = 87.8 bits (96), Expect = 5e-12 Identities = 127/177 (72%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 233272 AGCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCATT 233331 |||||| ||||||||||| || ||||| ||||| || |||| || |||||||||||| Sbjct 319 AGCACCATGAGCAATCATGCAGTCACGCTCCATCTCCCCAAATCGGAGACCACCATCACG 260 Query 233332 TGACCTACCCTGGACTGTTTGACGAGTTA-AAACAGTTCTTGGACCCTGAGCACGATAAT 233390 ||||| ||||| | | ||| | ||| | | | | | |||||| |||| ||| Sbjct 259 TGACCGACCCTCAGCAGGTTGTCTAGTAAGGATCTGCAC-AGGACCCCTTCCACGTGAAT 201 Query 233391 TAATTTTATCTTTAACCATATGCTTCAGTCTCATATAATAACACGGACCAATAAATA 233447 ||||| || | ||||||||||||||| || || || |||||||| |||| Sbjct 200 GTATTTTGTCATCAACCATATGCTTCAGCCTTTGGTAGTAGGTCGGACCAAGGAATA 144 >seq230622 Length=445 Score = 84.2 bits (92), Expect = 6e-11 Identities = 184/276 (67%), Gaps = 0/276 (0%) Strand=Plus/Minus Query 133082 ATGTTCCCAATTAAGGACGACGAGATTTGGCAGATGTATAAAAAACAGCAAGATTTATTT 133141 ||||| |||||| || || | |||||| ||||||| || || ||| || || Sbjct 291 ATGTTTCCAATTCAGTACCCTCAAATTTGGGAGATGTACAAGAAGGCCGAAGCTTCCTTC 232 Query 133142 TGGACTTCAACTGAAGTAGATTTATCCAAAGACCCAGCCCACTGGGAAGCCCTTACTGGG 133201 ||||| | ||||| ||| | || | || | ||| ||||| || | ||| Sbjct 231 TGGACCGCCGAGGAAGTCGATCTCTCACAGGATCTTCGCCATTGGGAGTCCTTAACTCCC 172 Query 133202 GATGAAAAACATTTTATTTCTATGATTTTAGCGTTTTTTGCTGCGAGTGATGGTATTGTT 133261 || || || || || || || | | || || |||||||| |||||| |||||| Sbjct 171 GACGAGAAGCACTTCATCACTCACGTGCTTGCCTTCTTTGCTGCATCTGATGGCATTGTT 112 Query 133262 CTTGAAAATTTAGGAACACGGTTTATGGGAGAAGTTCAACTGGCCGAAGCCCGTGCCTTT 133321 | || ||| | | ||| || ||| |||||||||| | | |||||| | |||||| Sbjct 111 TTGGAGAATCTTGCTGGACGTTTCATGAAAGAAGTTCAAGTCTCTGAAGCCAGAGCCTTT 52 Query 133322 TATGGGCTACAGATTGCGATGGAAAATATCCATTCT 133357 ||||| | || || || || ||||||||||| ||| Sbjct 51 TATGGATTTCAAATCGCCATTGAAAATATCCACTCT 16 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1466063900726744