Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19]
305,112 sequences; 176,727,258 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq299969 150 2e-30
seq230622 129 7e-24
seq273947 86.0 8e-11
>seq299969
Length=1347
Score = 150 bits (166), Expect = 2e-30
Identities = 213/296 (72%), Gaps = 4/296 (1%)
Strand=Plus/Plus
Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692
|||||||| |||||||| || || ||||| || || ||||| || | || ||||||||
Sbjct 17 GAGTGGATATTCTCGATCGCAATTTGGAATCCATAGAAGGCTCTGGCTTCAGCCACTTGA 76
Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752
|| || |||||||| || ||||| || ||||| |||||||| || || |||||
Sbjct 77 ACTTCTTTCATGAAGCGTCCGGCGAGATTCTCCAAAACGATGCCATCAGAAGCAGCGAAG 136
Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGG--A 869810
|| || || ||||| |||| ||||| ||||||| | | || |||| ||| |
Sbjct 137 AAGGCAAGAACGTGAGTGATGAAGTGTTTCTCGTCGGAAGTTAAGGATTCCCAATGGCGA 196
Query 869811 CGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGT 869870
||| | | | ||| || || |||||||| ||||||| ||||| ||||| || ||||
Sbjct 197 AGGTC-CTGTGA-GAGATCGACTTCCTCGGCAGTCCAGAAGGAGGCTTCGGCTTTCTTGT 254
Query 869871 ACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTG 869926
|||||||||| | ||| | || | || ||||| | | ||||| | |||||||
Sbjct 255 ACATCTCCCAGATTTGAGGATACTGAATCGGGAACATGCAGAAGCGATCGGGGTTG 310
>seq230622
Length=445
Score = 129 bits (142), Expect = 7e-24
Identities = 207/295 (70%), Gaps = 2/295 (1%)
Strand=Plus/Plus
Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692
|||||||| || || |||||||| || || || |||||||| || | || | |||||
Sbjct 17 GAGTGGATATTTTCAATGGCGATTTGAAATCCATAAAAGGCTCTGGCTTCAGAGACTTGA 76
Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752
|| || |||||||| || || || || ||||| || ||||| || || || ||
Sbjct 77 ACTTCTTTCATGAAACGTCCAGCAAGATTCTCCAAAACAATGCCATCAGATGCAGCAAAG 136
Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812
|| || || ||||| |||| ||||| ||||||| | | ||| |||| ||| ||
Sbjct 137 AAGGCAAGCACGTGAGTGATGAAGTGCTTCTCGTCGGGAGTTAAGGACTCCCAATGG-CG 195
Query 869813 GTG-TCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTA 869871
| || ||| || || |||||||||||||||| || || |||||||| |||||
Sbjct 196 AAGATCCTGTGAGAGATCGACTTCCTCGGCGGTCCAGAAGGAAGCTTCGGCCTTCTTGTA 255
Query 869872 CATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTG 869926
||||||||| | ||| |||| | || || || | | ||||| | ||||||
Sbjct 256 CATCTCCCAAATTTGAGGGTACTGAATTGGAAACATGCAGAAGCGATCAGGGTTG 310
>seq273947
Length=700
Score = 86.0 bits (94), Expect = 8e-11
Identities = 133/189 (70%), Gaps = 6/189 (3%)
Strand=Plus/Minus
Query 869215 GAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAA 869274
||| || ||||| | || || || || | ||| || |||| |||||| || || |||||
Sbjct 253 GAGTCCAGGCATTAATCCACGTTTTTTCAACCAGAAAATGGAGCAGAAGCTACCTGAGAA 194
Query 869275 AAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTC 869334
||||| || || || ||||| | | | ||||||||||| ||| || |
Sbjct 193 GAAGATTCCTTCAACACAAGCAAATGCCAAAATACGCTCGGCAAA-----CGATTCCGTG 139
Query 869335 CTTGTTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGAT 869394
| ||| ||||||||| | |||||| || ||||| ||| | || | || ||||| |||||
Sbjct 138 C-TGTCGATCCACTTTAACGCCCAATCAGCCTTCTTCTTGACACAGGGGACCGTCTCGAT 80
Query 869395 GGCGCGAAA 869403
|| |||||
Sbjct 79 TGCACGAAA 71
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6082100280440504
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |