Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq299969 150 2e-30 seq230622 129 7e-24 seq273947 86.0 8e-11 >seq299969 Length=1347 Score = 150 bits (166), Expect = 2e-30 Identities = 213/296 (72%), Gaps = 4/296 (1%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||| |||||||| || || ||||| || || ||||| || | || |||||||| Sbjct 17 GAGTGGATATTCTCGATCGCAATTTGGAATCCATAGAAGGCTCTGGCTTCAGCCACTTGA 76 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || |||||||| || ||||| || ||||| |||||||| || || ||||| Sbjct 77 ACTTCTTTCATGAAGCGTCCGGCGAGATTCTCCAAAACGATGCCATCAGAAGCAGCGAAG 136 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGG--A 869810 || || || ||||| |||| ||||| ||||||| | | || |||| ||| | Sbjct 137 AAGGCAAGAACGTGAGTGATGAAGTGTTTCTCGTCGGAAGTTAAGGATTCCCAATGGCGA 196 Query 869811 CGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGT 869870 ||| | | | ||| || || |||||||| ||||||| ||||| ||||| || |||| Sbjct 197 AGGTC-CTGTGA-GAGATCGACTTCCTCGGCAGTCCAGAAGGAGGCTTCGGCTTTCTTGT 254 Query 869871 ACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTG 869926 |||||||||| | ||| | || | || ||||| | | ||||| | ||||||| Sbjct 255 ACATCTCCCAGATTTGAGGATACTGAATCGGGAACATGCAGAAGCGATCGGGGTTG 310 >seq230622 Length=445 Score = 129 bits (142), Expect = 7e-24 Identities = 207/295 (70%), Gaps = 2/295 (1%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||| || || |||||||| || || || |||||||| || | || | ||||| Sbjct 17 GAGTGGATATTTTCAATGGCGATTTGAAATCCATAAAAGGCTCTGGCTTCAGAGACTTGA 76 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || |||||||| || || || || ||||| || ||||| || || || || Sbjct 77 ACTTCTTTCATGAAACGTCCAGCAAGATTCTCCAAAACAATGCCATCAGATGCAGCAAAG 136 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || || ||||| |||| ||||| ||||||| | | ||| |||| ||| || Sbjct 137 AAGGCAAGCACGTGAGTGATGAAGTGCTTCTCGTCGGGAGTTAAGGACTCCCAATGG-CG 195 Query 869813 GTG-TCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTA 869871 | || ||| || || |||||||||||||||| || || |||||||| ||||| Sbjct 196 AAGATCCTGTGAGAGATCGACTTCCTCGGCGGTCCAGAAGGAAGCTTCGGCCTTCTTGTA 255 Query 869872 CATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTG 869926 ||||||||| | ||| |||| | || || || | | ||||| | |||||| Sbjct 256 CATCTCCCAAATTTGAGGGTACTGAATTGGAAACATGCAGAAGCGATCAGGGTTG 310 >seq273947 Length=700 Score = 86.0 bits (94), Expect = 8e-11 Identities = 133/189 (70%), Gaps = 6/189 (3%) Strand=Plus/Minus Query 869215 GAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAA 869274 ||| || ||||| | || || || || | ||| || |||| |||||| || || ||||| Sbjct 253 GAGTCCAGGCATTAATCCACGTTTTTTCAACCAGAAAATGGAGCAGAAGCTACCTGAGAA 194 Query 869275 AAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTC 869334 ||||| || || || ||||| | | | ||||||||||| ||| || | Sbjct 193 GAAGATTCCTTCAACACAAGCAAATGCCAAAATACGCTCGGCAAA-----CGATTCCGTG 139 Query 869335 CTTGTTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGAT 869394 | ||| ||||||||| | |||||| || ||||| ||| | || | || ||||| ||||| Sbjct 138 C-TGTCGATCCACTTTAACGCCCAATCAGCCTTCTTCTTGACACAGGGGACCGTCTCGAT 80 Query 869395 GGCGCGAAA 869403 || ||||| Sbjct 79 TGCACGAAA 71 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6082100280440504