Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19]
305,112 sequences; 176,727,258 total letters
Query= NC_021924.1
Length=129052
Score E
Sequences producing significant alignments: (Bits) Value
seq281289 100 2e-16
seq21568 91.5 1e-13
seq281664 89.7 4e-13
seq126021 87.8 1e-12
seq280556 84.2 2e-11
>seq281289
Length=787
Score = 100 bits (110), Expect = 2e-16
Identities = 148/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
|||||||| ||||| |||||| | ||||||||||| || ||| | || ||| |
Sbjct 326 ATGCAAATCTTTGTGAAAACTCTCACCGGCAAAACAATAACCCTTGAGGTGGAAAGTTCT 385
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392
|||||| | | | | || || || ||| || ||||| || | || || ||
Sbjct 386 GATACTATTGACAATGTGAAGGCCAAAATTCAGGATAAAGAGGGAATCCCTCCAGACCAG 445
Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452
||||| ||||||| ||| || || ||||| ||||||| |||| | || ||||| |||
Sbjct 446 CAAAGGCTTATTTTTGCTGGAAAGCAGCTCGAGGATGGTCGAACCCTCGCCGATTATAAC 505
Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482
|| ||||||||||| || | ||| |||||
Sbjct 506 ATACAAAAAGAATCAACCCTTCACTTGGTG 535
>seq21568
Length=652
Score = 91.5 bits (100), Expect = 1e-13
Identities = 159/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331
|||||| || || || || || || || ||||| ||||| || | ||| || |
Sbjct 538 AATGCAGATTTTCGTGAAGACATTGACTGGCAAGACCATCACTTTGGAAGTAGAAAGTTC 479
Query 110332 CGATACTGTCGGCCAGGTAAA-ACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390
||| || ||| | | || || ||| |||||| |||||||| || | || || |
Sbjct 478 CGACACCATCGACAATGTGAAGACA-AAGATTCAAGACAAAGAGGGAATCCCACCTGACC 420
Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450
| || || || || | ||| || || || ||||| |||| |||||| | || |||||||
Sbjct 419 AGCAGAGGCTGATCTTTGCAGGCAAGCAACTGGAAGATGGCAGAACTCTAGCAGATTACA 360
Query 110451 ACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499
|||| ||||| ||||| || |||| ||||| | ||||||| || ||
Sbjct 359 ACATCCAAAAGGAATCAACTCTGCATTTGGTGCTTCGACTGCGTGGTGG 311
>seq281664
Length=792
Score = 89.7 bits (98), Expect = 4e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
|||||||| |||||||||||| | ||||| || ||||| ||| | || ||| ||
Sbjct 776 ATGCAAATTTTTGTCAAAACTCTCACCGGAAAGACCATCACCTTGGAGGTTGAGTCTTCA 717
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392
|| || | | | | || || |||||| ||||| ||||| | ||| || |||
Sbjct 716 GACACAATTGACAACGTGAAGGCCAAGATTCAGGACAAGGAAGGTATCCCCCCAGACCAA 657
Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452
|| ||||| || | || || |||||| ||||||| | | |||| | || || ||||||
Sbjct 656 CAGAGACTCATCTTCGCTGGAAAACAGTTGGAGGACGGCCGAACTCTTGCAGACTACAAC 597
Query 110453 ATTCAAAAAGAATCTAC 110469
|| || || || |||||
Sbjct 596 ATCCAGAAGGAGTCTAC 580
>seq126021
Length=250
Score = 87.8 bits (96), Expect = 1e-12
Identities = 161/233 (69%), Gaps = 6/233 (3%)
Strand=Plus/Plus
Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGA--GC-C 110328
||||||||| || |||||||| | || || || || ||||| | ||| || || |
Sbjct 16 AATGCAAATTTTCGTCAAAACGCTCACGGGGAAGACTATTACACTAGAAGTTGAAAGCTC 75
Query 110329 TGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGA 110388
|||| || ||| | | || ||| |||||| ||||| ||||| | ||| |||
Sbjct 76 TGAC---ACAATCGACAATGTCAAAGCTAAGATTCAAGACAAGGAAGGTATTCCCCCGGA 132
Query 110389 TCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTA 110448
||| ||||| | || | ||| || || ||||| || |||| | ||| | || |||||
Sbjct 133 TCAGCAAAGGTTGATCTTTGCAGGCAAGCAGCTCGAAGATGGTCGTACACTAGCCGATTA 192
Query 110449 CAACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501
|||||||||||| || || || | ||| | ||| | | || || || ||||
Sbjct 193 CAACATTCAAAAGGAGTCCACTCTTCACCTTGTGCTCCGTCTTCGTGGTGGAA 245
>seq280556
Length=777
Score = 84.2 bits (92), Expect = 2e-11
Identities = 145/211 (69%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331
||||||||| ||||| || || ||||| || ||||| || || | ||| ||| |
Sbjct 762 AATGCAAATTTTTGTGAAGACCTTAACAGGAAAAACAATCACTTTGGAAGTTGAGAGTTC 703
Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391
|||||| | | | || ||| ||||| || |||||||| | || || ||
Sbjct 702 AGATACTATTGATAACGTTAAAGCTAAGATCCAAGATAAAGAAGGGATCCCACCAGACCA 643
Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451
|||||| | |||| || || || || |||| |||| ||| || | || ||||| ||
Sbjct 642 ACAAAGGTTAATTTTCGCTGGGAAGCAATTGGAAGATGGCAGGACTTTAGCCGATTATAA 583
Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTG 110482
||||||||| ||||| || | ||| |||||
Sbjct 582 CATTCAAAAGGAATCGACACTTCACTTGGTG 552
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 411306426836216
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |