Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq281289 100 2e-16 seq21568 91.5 1e-13 seq281664 89.7 4e-13 seq126021 87.8 1e-12 seq280556 84.2 2e-11 >seq281289 Length=787 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||| |||||| | ||||||||||| || ||| | || ||| | Sbjct 326 ATGCAAATCTTTGTGAAAACTCTCACCGGCAAAACAATAACCCTTGAGGTGGAAAGTTCT 385 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||||| | | | | || || || ||| || ||||| || | || || || Sbjct 386 GATACTATTGACAATGTGAAGGCCAAAATTCAGGATAAAGAGGGAATCCCTCCAGACCAG 445 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||||| ||||||| ||| || || ||||| ||||||| |||| | || ||||| ||| Sbjct 446 CAAAGGCTTATTTTTGCTGGAAAGCAGCTCGAGGATGGTCGAACCCTCGCCGATTATAAC 505 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 || ||||||||||| || | ||| ||||| Sbjct 506 ATACAAAAAGAATCAACCCTTCACTTGGTG 535 >seq21568 Length=652 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 |||||| || || || || || || || ||||| ||||| || | ||| || | Sbjct 538 AATGCAGATTTTCGTGAAGACATTGACTGGCAAGACCATCACTTTGGAAGTAGAAAGTTC 479 Query 110332 CGATACTGTCGGCCAGGTAAA-ACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390 ||| || ||| | | || || ||| |||||| |||||||| || | || || | Sbjct 478 CGACACCATCGACAATGTGAAGACA-AAGATTCAAGACAAAGAGGGAATCCCACCTGACC 420 Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450 | || || || || | ||| || || || ||||| |||| |||||| | || ||||||| Sbjct 419 AGCAGAGGCTGATCTTTGCAGGCAAGCAACTGGAAGATGGCAGAACTCTAGCAGATTACA 360 Query 110451 ACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||| ||||| ||||| || |||| ||||| | ||||||| || || Sbjct 359 ACATCCAAAAGGAATCAACTCTGCATTTGGTGCTTCGACTGCGTGGTGG 311 >seq281664 Length=792 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| |||||||||||| | ||||| || ||||| ||| | || ||| || Sbjct 776 ATGCAAATTTTTGTCAAAACTCTCACCGGAAAGACCATCACCTTGGAGGTTGAGTCTTCA 717 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | | || || |||||| ||||| ||||| | ||| || ||| Sbjct 716 GACACAATTGACAACGTGAAGGCCAAGATTCAGGACAAGGAAGGTATCCCCCCAGACCAA 657 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || ||||| || | || || |||||| ||||||| | | |||| | || || |||||| Sbjct 656 CAGAGACTCATCTTCGCTGGAAAACAGTTGGAGGACGGCCGAACTCTTGCAGACTACAAC 597 Query 110453 ATTCAAAAAGAATCTAC 110469 || || || || ||||| Sbjct 596 ATCCAGAAGGAGTCTAC 580 >seq126021 Length=250 Score = 87.8 bits (96), Expect = 1e-12 Identities = 161/233 (69%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGA--GC-C 110328 ||||||||| || |||||||| | || || || || ||||| | ||| || || | Sbjct 16 AATGCAAATTTTCGTCAAAACGCTCACGGGGAAGACTATTACACTAGAAGTTGAAAGCTC 75 Query 110329 TGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGA 110388 |||| || ||| | | || ||| |||||| ||||| ||||| | ||| ||| Sbjct 76 TGAC---ACAATCGACAATGTCAAAGCTAAGATTCAAGACAAGGAAGGTATTCCCCCGGA 132 Query 110389 TCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTA 110448 ||| ||||| | || | ||| || || ||||| || |||| | ||| | || ||||| Sbjct 133 TCAGCAAAGGTTGATCTTTGCAGGCAAGCAGCTCGAAGATGGTCGTACACTAGCCGATTA 192 Query 110449 CAACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 |||||||||||| || || || | ||| | ||| | | || || || |||| Sbjct 193 CAACATTCAAAAGGAGTCCACTCTTCACCTTGTGCTCCGTCTTCGTGGTGGAA 245 >seq280556 Length=777 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||| ||||| || || ||||| || ||||| || || | ||| ||| | Sbjct 762 AATGCAAATTTTTGTGAAGACCTTAACAGGAAAAACAATCACTTTGGAAGTTGAGAGTTC 703 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 |||||| | | | || ||| ||||| || |||||||| | || || || Sbjct 702 AGATACTATTGATAACGTTAAAGCTAAGATCCAAGATAAAGAAGGGATCCCACCAGACCA 643 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 |||||| | |||| || || || || |||| |||| ||| || | || ||||| || Sbjct 642 ACAAAGGTTAATTTTCGCTGGGAAGCAATTGGAAGATGGCAGGACTTTAGCCGATTATAA 583 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTG 110482 ||||||||| ||||| || | ||| ||||| Sbjct 582 CATTCAAAAGGAATCGACACTTCACTTGGTG 552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 411306426836216