Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq273947 93.3 7e-13 >seq273947 Length=700 Score = 93.3 bits (102), Expect = 7e-13 Identities = 175/258 (68%), Gaps = 6/258 (2%) Strand=Plus/Minus Query 794376 GAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAA 794435 ||| || ||||| | || || || || | ||| || |||| ||||| || || ||||| Sbjct 253 GAGTCCAGGCATTAATCCACGTTTTTTCAACCAGAAAATGGAGCAGAAGCTACCTGAGAA 194 Query 794436 AAAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTC 794495 ||||| || || || ||||| | | | ||||||||||| | ||| || Sbjct 193 GAAGATTCCTTCAACACAAGCAAATGCCAAAATACGCTCGGCAAACGATTCCGTGC---- 138 Query 794496 TTTGTTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGAT 794555 ||| ||||||||| | |||||| || ||||| ||| | || |||| ||||| ||||| Sbjct 137 --TGTCGATCCACTTTAACGCCCAATCAGCCTTCTTCTTGACACAGGGGACCGTCTCGAT 80 Query 794556 GGCGCGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGA 794615 || ||||| | | ||||||| | || |||| || || |||| || || Sbjct 79 TGCACGAAATAATCGACTCTTCTCGTTTGAATCTTTGATATAAGTTTCGAGAAGAAGACT 20 Query 794616 GTAGGTCTCTGAGTGGAT 794633 ||| |||| |||||||| Sbjct 19 GTACATCTCAGAGTGGAT 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7883790244944168