Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq281664 147 1e-30 seq44495 122 6e-23 seq48980 102 5e-17 seq280556 100 2e-16 seq81485 96.9 2e-15 >seq281664 Length=792 Score = 147 bits (162), Expect = 1e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 |||||||||||| | ||||| ||||||| ||| ||||||||||||||| ||||| | Sbjct 320 TTCCTCCCCTCAGACGAAGGACAAGGTGAAGGGTTGACTCCTTCTGAATGTTGTAGTCAG 379 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 || | | |||| ||||| ||||||||||| ||||||| || |||||||||| | | Sbjct 380 CAAGAGTCCTTCCATCCTCCAGCTGCTTTCCGGCAAAGATCAATCTTTGCTGGTCTGGGG 439 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGA 34928 | | || |||||||| | |||||| || ||| | || | ||| | ||||| Sbjct 440 GGATGCCTTCCTTGTCCTGAATTTTTGCCTTCACGTTGTCGATGGTATCAGAGCTCTCGA 499 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | ||| ||||||||||| || | ||||| || ||||||||||| Sbjct 500 CCTCGAGGGTGATGGTCTTTCCAGTCAAAGTCTTAACGAAGATCTGCAT 548 Score = 122 bits (134), Expect = 6e-23 Identities = 158/216 (73%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||||| ||| ||||||||||||||| || || | ||| | | |||| Sbjct 109 AGGACAAGGTGAAGGGTAGACTCCTTCTGAATGTTGTAATCAGCAAGGGTCCTTCCATCT 168 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| |||||||| || ||||||| || ||||||||| | || | || |||||||| Sbjct 169 TCCAGCTGCTTTCCAGCAAAGATCAACCGCTGCTGGTCTGGAGGAATTCCTTCCTTGTCC 228 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | |||||| || || || | ||||| ||| ||| || || | ||| || Sbjct 229 TGGATTTTTGCCTTAAC--AT--TGTCGATTGTATCAGAACTCTCCACCTCCAAGGTGAT 284 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||| || || |||||||| |||||||||||||| Sbjct 285 GGTCTTCCCTGTCAGGGTCTTGACAAAGATCTGCAT 320 Score = 82.4 bits (90), Expect = 5e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||| ||||| ||||| | || | || | || |||| || ||||| ||||| Sbjct 585 CTCCTTCTGGATGTTGTAGTCTGCAAGAGTTCGGCCGTCCTCCAACTGTTTTCCAGCGAA 644 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||| |||| || |||||| | || | || |||||||| | || || || ||| Sbjct 645 GATGAGTCTCTGTTGGTCTGGGGGGATACCTTCCTTGTCCTGAATCTTGGCCTTCACGTT 704 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | || | || | ||| || || | ||| ||||||||||| ||||| || || || Sbjct 705 GTCAATTGTGTCTGAAGACTCAACCTCCAAGGTGATGGTCTTTCCGGTGAGAGTTTTGAC 764 Query 34966 AAAGATCTGCATG 34978 ||| || |||||| Sbjct 765 AAAAATTTGCATG 777 >seq44495 Length=1402 Score = 122 bits (134), Expect = 6e-23 Identities = 155/213 (73%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 || ||||||| || ||||||||| |||||||| || | ||| | || |||| || Sbjct 1166 ACAAGGTGAAGAGTCGACTCCTTCTGGATGTTATAATCGGCAAGGGTACGACCATCCTCT 1225 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888 |||||||| ||||||||||| |||| |||||||||| | || | ||||||||||| | Sbjct 1226 AGTTGCTTCCCGGCGAAGATAAGTCTTTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGG 1285 Query 34889 ATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGT 34944 || ||| || || | ||||||| ||| || || || || | ||| ||||| Sbjct 1286 ATCTTTGCCTTAAC----GTTATCGATGGTATCAGAGGATTCAACCTCGAGGGTGATGGT 1341 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || ||||||||||| || || ||||| Sbjct 1342 TTTACCTGTCAGGGTCTTTACGAAAATTTGCAT 1374 Score = 111 bits (122), Expect = 1e-19 Identities = 156/217 (72%), Gaps = 8/217 (4%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 |||||| ||||||| ||| ||||||||||||||| || || | || | | |||| Sbjct 706 CAGGACGAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGCGAGAGTCCTTCCATC 765 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| || ||||||||||| | ||||| || | || | || |||||||| Sbjct 766 CTCAAGCTGCTTCCCAGCGAAGATCAGCCTCTGCTGATCCGGAGGGATGCCTTCCTTGTC 825 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTA 34940 | ||||| ||| || || ||||||| ||| | ||| || || | ||| | Sbjct 826 CTGAATTTTAGCTTTCAC--AT--TATCGATCGTGTCAGAGCTCTCCACCTCCAGGGTGA 881 Query 34941 TGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||||||| || | |||||| || ||||||||||| Sbjct 882 TGGTCTTTCCGGTCAAGGTCTTCACGAAGATCTGCAT 918 Score = 95.1 bits (104), Expect = 8e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||| | ||| ||||||||| ||||||||||| | | | | |||| Sbjct 935 AGCACCAAGTGCAGGGTTGACTCCTTCTGGATGTTATAGTCAGCCAAAGTCCTACCATCT 994 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| |||||||| ||||||||||| | ||||||||| | || | ||||||||||| Sbjct 995 TCCAGCTGCTTTCCAGCGAAGATCAGCCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCT 1054 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || ||| || || | ||| |||||| Sbjct 1055 TGGATCTTAGCCTTGACGTTGTCAATGGTGTCCGAACTCTCAACCTCTAAGGTGATGGTC 1114 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || | ||||| || || |||||||| Sbjct 1115 TTGCCGGTCAACGTCTTGACGAAAATCTGCAT 1146 >seq48980 Length=3483 Score = 102 bits (112), Expect = 5e-17 Identities = 156/220 (71%), Gaps = 8/220 (4%) Strand=Plus/Minus Query 34762 CCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTC 34821 ||| | ||| || || | ||| ||||||||| ||||| ||||| | || | || | Sbjct 1039 CCTTAAGACAAGATGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGTGTTCGACC 980 Query 34822 ATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTT 34881 ||| |||| ||||| |||||||| || || || |||||||| |||| | |||||||| Sbjct 979 ATCCTCCATCTGCTTACCGGCGAAAATGAGACGCTGCTGGTCCGGCGGTATTCCCTCCTT 920 Query 34882 GTCGTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGG 34937 || | || ||| ||||| || ||||||| ||| |||||| || | | Sbjct 919 ATCCTGAATCTTTGCCTTGAC--AT--TATCGATGGTATCAGAACTCTCGACCTCGAGAG 864 Query 34938 TTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||||||| || || || || || || ||||||||||| Sbjct 863 TTATGGTCTTCCCGGTAAGCGTTTTCACGAAGATCTGCAT 824 >seq280556 Length=777 Score = 100 bits (110), Expect = 2e-16 Identities = 153/216 (71%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||| | |||| ||||| |||||||| ||||| | | | || |||| Sbjct 322 AGGACAAGGTGGAGGGTGGATTCCTTTTGAATGTTGTAGTCAGCCAATGTACGTCCATCC 381 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| |||||| || ||||| ||||||| ||||||||| | || | ||||||||||| Sbjct 382 TCCAATTGCTTCCCAGCGAAAATCAGTCTTTGCTGGTCAGGAGGAATACCCTCCTTGTCC 441 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | ||||| || || || | ||||| || | ||| || || | || || Sbjct 442 TGGATTTTAGCCTTCAC--AT--TGTCGATAGTGTCTGAGCTCTCAACTTCTAATGTGAT 497 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||||||| || | |||||| ||||| || ||||| Sbjct 498 GGTCTTTCCTGTTAAGGTCTTCACAAATATTTGCAT 533 >seq81485 Length=213 Score = 96.9 bits (106), Expect = 2e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 34822 ATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTT 34881 ||| || |||||||||||||||||||| || ||||||||||| | || | || ||||| Sbjct 213 ATCCTCGAGTTGCTTTCCGGCGAAGATGAGACGTTGCTGGTCAGGGGGAATTCCTTCCTT 154 Query 34882 GTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTAT 34941 ||| | || || |||||| | |||| ||| | ||| || |||| ||| || Sbjct 153 GTCCTGGATCTTGGACTTGACGTTGTCGATCGTATCAGATGACTCAACCTCAAGGGTGAT 94 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||| || || ||||| || || ||||| ||||| Sbjct 93 GGTCTTGCCGGTTAGGGTTTTAACGAAGATTTGCAT 58 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324481694224328