Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19]
305,112 sequences; 176,727,258 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq281664 147 1e-30
seq44495 122 6e-23
seq48980 102 5e-17
seq280556 100 2e-16
seq81485 96.9 2e-15
>seq281664
Length=792
Score = 147 bits (162), Expect = 1e-30
Identities = 170/229 (74%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808
|||||||||||| | ||||| ||||||| ||| ||||||||||||||| ||||| |
Sbjct 320 TTCCTCCCCTCAGACGAAGGACAAGGTGAAGGGTTGACTCCTTCTGAATGTTGTAGTCAG 379
Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868
|| | | |||| ||||| ||||||||||| ||||||| || |||||||||| | |
Sbjct 380 CAAGAGTCCTTCCATCCTCCAGCTGCTTTCCGGCAAAGATCAATCTTTGCTGGTCTGGGG 439
Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGA 34928
| | || |||||||| | |||||| || ||| | || | ||| | |||||
Sbjct 440 GGATGCCTTCCTTGTCCTGAATTTTTGCCTTCACGTTGTCGATGGTATCAGAGCTCTCGA 499
Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
| || | ||| ||||||||||| || | ||||| || |||||||||||
Sbjct 500 CCTCGAGGGTGATGGTCTTTCCAGTCAAAGTCTTAACGAAGATCTGCAT 548
Score = 122 bits (134), Expect = 6e-23
Identities = 158/216 (73%), Gaps = 8/216 (4%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||| ||||||| ||| ||||||||||||||| || || | ||| | | ||||
Sbjct 109 AGGACAAGGTGAAGGGTAGACTCCTTCTGAATGTTGTAATCAGCAAGGGTCCTTCCATCT 168
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
||||| |||||||| || ||||||| || ||||||||| | || | || ||||||||
Sbjct 169 TCCAGCTGCTTTCCAGCAAAGATCAACCGCTGCTGGTCTGGAGGAATTCCTTCCTTGTCC 228
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941
| |||||| || || || | ||||| ||| ||| || || | ||| ||
Sbjct 229 TGGATTTTTGCCTTAAC--AT--TGTCGATTGTATCAGAACTCTCCACCTCCAAGGTGAT 284
Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|||||| || || |||||||| ||||||||||||||
Sbjct 285 GGTCTTCCCTGTCAGGGTCTTGACAAAGATCTGCAT 320
Score = 82.4 bits (90), Expect = 5e-11
Identities = 134/193 (69%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845
||||||||| ||||| ||||| | || | || | || |||| || ||||| |||||
Sbjct 585 CTCCTTCTGGATGTTGTAGTCTGCAAGAGTTCGGCCGTCCTCCAACTGTTTTCCAGCGAA 644
Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905
||| |||| || |||||| | || | || |||||||| | || || || |||
Sbjct 645 GATGAGTCTCTGTTGGTCTGGGGGGATACCTTCCTTGTCCTGAATCTTGGCCTTCACGTT 704
Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965
| || | || | ||| || || | ||| ||||||||||| ||||| || || ||
Sbjct 705 GTCAATTGTGTCTGAAGACTCAACCTCCAAGGTGATGGTCTTTCCGGTGAGAGTTTTGAC 764
Query 34966 AAAGATCTGCATG 34978
||| || ||||||
Sbjct 765 AAAAATTTGCATG 777
>seq44495
Length=1402
Score = 122 bits (134), Expect = 6e-23
Identities = 155/213 (73%), Gaps = 8/213 (4%)
Strand=Plus/Plus
Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828
|| ||||||| || ||||||||| |||||||| || | ||| | || |||| ||
Sbjct 1166 ACAAGGTGAAGAGTCGACTCCTTCTGGATGTTATAATCGGCAAGGGTACGACCATCCTCT 1225
Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888
|||||||| ||||||||||| |||| |||||||||| | || | ||||||||||| |
Sbjct 1226 AGTTGCTTCCCGGCGAAGATAAGTCTTTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGG 1285
Query 34889 ATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGT 34944
|| ||| || || | ||||||| ||| || || || || | ||| |||||
Sbjct 1286 ATCTTTGCCTTAAC----GTTATCGATGGTATCAGAGGATTCAACCTCGAGGGTGATGGT 1341
Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| || || ||||||||||| || || |||||
Sbjct 1342 TTTACCTGTCAGGGTCTTTACGAAAATTTGCAT 1374
Score = 111 bits (122), Expect = 1e-19
Identities = 156/217 (72%), Gaps = 8/217 (4%)
Strand=Plus/Plus
Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824
|||||| ||||||| ||| ||||||||||||||| || || | || | | ||||
Sbjct 706 CAGGACGAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGCGAGAGTCCTTCCATC 765
Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
|| || ||||| || ||||||||||| | ||||| || | || | || ||||||||
Sbjct 766 CTCAAGCTGCTTCCCAGCGAAGATCAGCCTCTGCTGATCCGGAGGGATGCCTTCCTTGTC 825
Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTA 34940
| ||||| ||| || || ||||||| ||| | ||| || || | ||| |
Sbjct 826 CTGAATTTTAGCTTTCAC--AT--TATCGATCGTGTCAGAGCTCTCCACCTCCAGGGTGA 881
Query 34941 TGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|||||||||| || | |||||| || |||||||||||
Sbjct 882 TGGTCTTTCCGGTCAAGGTCTTCACGAAGATCTGCAT 918
Score = 95.1 bits (104), Expect = 8e-15
Identities = 148/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| |||| ||| | ||| ||||||||| ||||||||||| | | | | ||||
Sbjct 935 AGCACCAAGTGCAGGGTTGACTCCTTCTGGATGTTATAGTCAGCCAAAGTCCTACCATCT 994
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
||||| |||||||| ||||||||||| | ||||||||| | || | |||||||||||
Sbjct 995 TCCAGCTGCTTTCCAGCGAAGATCAGCCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCT 1054
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| || || |||||| | || | || ||| || || | ||| ||||||
Sbjct 1055 TGGATCTTAGCCTTGACGTTGTCAATGGTGTCCGAACTCTCAACCTCTAAGGTGATGGTC 1114
Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| || || | ||||| || || ||||||||
Sbjct 1115 TTGCCGGTCAACGTCTTGACGAAAATCTGCAT 1146
>seq48980
Length=3483
Score = 102 bits (112), Expect = 5e-17
Identities = 156/220 (71%), Gaps = 8/220 (4%)
Strand=Plus/Minus
Query 34762 CCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTC 34821
||| | ||| || || | ||| ||||||||| ||||| ||||| | || | || |
Sbjct 1039 CCTTAAGACAAGATGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGTGTTCGACC 980
Query 34822 ATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTT 34881
||| |||| ||||| |||||||| || || || |||||||| |||| | ||||||||
Sbjct 979 ATCCTCCATCTGCTTACCGGCGAAAATGAGACGCTGCTGGTCCGGCGGTATTCCCTCCTT 920
Query 34882 GTCGTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGG 34937
|| | || ||| ||||| || ||||||| ||| |||||| || | |
Sbjct 919 ATCCTGAATCTTTGCCTTGAC--AT--TATCGATGGTATCAGAACTCTCGACCTCGAGAG 864
Query 34938 TTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|||||||||| || || || || || || |||||||||||
Sbjct 863 TTATGGTCTTCCCGGTAAGCGTTTTCACGAAGATCTGCAT 824
>seq280556
Length=777
Score = 100 bits (110), Expect = 2e-16
Identities = 153/216 (71%), Gaps = 8/216 (4%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||| ||||| | |||| ||||| |||||||| ||||| | | | || ||||
Sbjct 322 AGGACAAGGTGGAGGGTGGATTCCTTTTGAATGTTGTAGTCAGCCAATGTACGTCCATCC 381
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|||| |||||| || ||||| ||||||| ||||||||| | || | |||||||||||
Sbjct 382 TCCAATTGCTTCCCAGCGAAAATCAGTCTTTGCTGGTCAGGAGGAATACCCTCCTTGTCC 441
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941
| ||||| || || || | ||||| || | ||| || || | || ||
Sbjct 442 TGGATTTTAGCCTTCAC--AT--TGTCGATAGTGTCTGAGCTCTCAACTTCTAATGTGAT 497
Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||||||||| || | |||||| ||||| || |||||
Sbjct 498 GGTCTTTCCTGTTAAGGTCTTCACAAATATTTGCAT 533
>seq81485
Length=213
Score = 96.9 bits (106), Expect = 2e-15
Identities = 115/156 (74%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 34822 ATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTT 34881
||| || |||||||||||||||||||| || ||||||||||| | || | || |||||
Sbjct 213 ATCCTCGAGTTGCTTTCCGGCGAAGATGAGACGTTGCTGGTCAGGGGGAATTCCTTCCTT 154
Query 34882 GTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTAT 34941
||| | || || |||||| | |||| ||| | ||| || |||| ||| ||
Sbjct 153 GTCCTGGATCTTGGACTTGACGTTGTCGATCGTATCAGATGACTCAACCTCAAGGGTGAT 94
Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|||||| || || ||||| || || ||||| |||||
Sbjct 93 GGTCTTGCCGGTTAGGGTTTTAACGAAGATTTGCAT 58
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324481694224328
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |