Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq281664 98.7 8e-16 seq281289 91.5 1e-13 >seq281664 Length=792 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||||||||||||||||||| | || || || ||||| ||| | || ||| || Sbjct 776 ATGCAAATTTTTGTCAAAACTCTCACCGGAAAGACCATCACCTTGGAGGTTGAGTCTTCA 717 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | | || || |||||| || || ||||| | ||| || || Sbjct 716 GACACAATTGACAACGTGAAGGCCAAGATTCAGGACAAGGAAGGTATCCCCCCAGACCAA 657 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 |||||||| || | || || |||||| ||||||||| | ||| | || ||||||||| Sbjct 656 CAGAGACTCATCTTCGCTGGAAAACAGTTGGAGGACGGCCGAACTCTTGCAGACTACAAC 597 Query 107736 ATTCAAAAGGAGTCTAC 107752 || || ||||||||||| Sbjct 596 ATCCAGAAGGAGTCTAC 580 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || || || || ||||| || || || ||||| ||| |||| ||| ||| Sbjct 548 ATGCAGATCTTCGTTAAGACTTTGACTGGAAAGACCATCACCCTCGAGGTCGAGAGCTCT 489 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| ||| | | || || ||| ||| || || |||||| | ||| || || Sbjct 488 -GATACCATCGACAACGTGAAGGCAAAAATTCAGGACAAGGAAGGCATCCCCCCAGACCA 430 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||| ||| | || | ||| || || ||||||||||| | | || | || |||||||| Sbjct 429 GCAAAGATTGATCTTTGCCGGAAAGCAGCTGGAGGATGGAAGGACTCTTGCTGACTACAA 370 Query 107735 CATTCAAAAGGAGTCTAC 107752 |||||| |||||||| || Sbjct 369 CATTCAGAAGGAGTCAAC 352 >seq281289 Length=787 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 ||||||||| || || ||||| | || || |||||||| ||| | || ||| ||| Sbjct 553 AATGCAAATCTTCGTGAAAACCCTCACTGGTAAAACCATCACCTTAGAGGTGGAAAGCTC 612 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 ||||| ||| | || || ||||| |||||||| || | ||| || | Sbjct 613 T-GATACCATCGATAATGTGAAGGCTAAGATCCAAGATAAAGAGGGAATCCCCCCTGACC 671 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 |||||||||| |||| || |||||||| || || || | | || |||||||||||| Sbjct 672 AGCAGAGACTAATTTTCGCTGGTAAACAACTTGAAGATGGCCGCACTTTGGCGGACTACA 731 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 | ||||| ||||| || || ||||| ||||| Sbjct 732 ATATTCAGAAGGAATCAACATTGCATTTGGTG 763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397393555678168