Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19]
305,112 sequences; 176,727,258 total letters
Query= NC_023177.1
Length=124688
Score E
Sequences producing significant alignments: (Bits) Value
seq281664 98.7 8e-16
seq281289 91.5 1e-13
>seq281664
Length=792
Score = 98.7 bits (108), Expect = 8e-16
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
||||||||||||||||||||| | || || || ||||| ||| | || ||| ||
Sbjct 776 ATGCAAATTTTTGTCAAAACTCTCACCGGAAAGACCATCACCTTGGAGGTTGAGTCTTCA 717
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
|| || | | | | || || |||||| || || ||||| | ||| || ||
Sbjct 716 GACACAATTGACAACGTGAAGGCCAAGATTCAGGACAAGGAAGGTATCCCCCCAGACCAA 657
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735
|||||||| || | || || |||||| ||||||||| | ||| | || |||||||||
Sbjct 656 CAGAGACTCATCTTCGCTGGAAAACAGTTGGAGGACGGCCGAACTCTTGCAGACTACAAC 597
Query 107736 ATTCAAAAGGAGTCTAC 107752
|| || |||||||||||
Sbjct 596 ATCCAGAAGGAGTCTAC 580
Score = 84.2 bits (92), Expect = 2e-11
Identities = 139/198 (70%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614
||||| || || || || ||||| || || || ||||| ||| |||| ||| |||
Sbjct 548 ATGCAGATCTTCGTTAAGACTTTGACTGGAAAGACCATCACCCTCGAGGTCGAGAGCTCT 489
Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674
||||| ||| | | || || ||| ||| || || |||||| | ||| || ||
Sbjct 488 -GATACCATCGACAACGTGAAGGCAAAAATTCAGGACAAGGAAGGCATCCCCCCAGACCA 430
Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734
||| ||| | || | ||| || || ||||||||||| | | || | || ||||||||
Sbjct 429 GCAAAGATTGATCTTTGCCGGAAAGCAGCTGGAGGATGGAAGGACTCTTGCTGACTACAA 370
Query 107735 CATTCAAAAGGAGTCTAC 107752
|||||| |||||||| ||
Sbjct 369 CATTCAGAAGGAGTCAAC 352
>seq281289
Length=787
Score = 91.5 bits (100), Expect = 1e-13
Identities = 149/212 (70%), Gaps = 2/212 (1%)
Strand=Plus/Plus
Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613
||||||||| || || ||||| | || || |||||||| ||| | || ||| |||
Sbjct 553 AATGCAAATCTTCGTGAAAACCCTCACTGGTAAAACCATCACCTTAGAGGTGGAAAGCTC 612
Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673
||||| ||| | || || ||||| |||||||| || | ||| || |
Sbjct 613 T-GATACCATCGATAATGTGAAGGCTAAGATCCAAGATAAAGAGGGAATCCCCCCTGACC 671
Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733
|||||||||| |||| || |||||||| || || || | | || ||||||||||||
Sbjct 672 AGCAGAGACTAATTTTCGCTGGTAAACAACTTGAAGATGGCCGCACTTTGGCGGACTACA 731
Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGTG 107765
| ||||| ||||| || || ||||| |||||
Sbjct 732 ATATTCAGAAGGAATCAACATTGCATTTGGTG 763
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397393555678168
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |