Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq281289 163 2e-35 seq126021 156 3e-33 seq21568 145 6e-30 seq279770 141 7e-29 seq280556 127 2e-24 seq281664 113 3e-20 seq44495 111 1e-19 seq277496 98.7 8e-16 seq124980 87.8 1e-12 >seq281289 Length=787 Score = 163 bits (180), Expect = 2e-35 Identities = 169/219 (77%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 29569 AAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGA 29628 ||||| |||||||| ||||| || ||||||||||| ||||||||||| || | ||| ||| Sbjct 543 AAACGGAGCACCAAGTGAAGGGTTGATTCTTTTTGTATGTTATAATCGGCGAGGGTTCGA 484 Query 29629 GAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCT 29688 ||| ||||| || || |||||| | || | |||||||| || || || || |||||| Sbjct 483 CCATCCTCGAGCTGCTTTCCAGCAAAAATAAGCCTTTGCTGGTCTGGAGGGATTCCCTCT 424 Query 29689 TTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGT 29747 || || || |||||| | || ||| | || | ||| |||||| ||| || ||||| || Sbjct 423 TTATCCTG-AATTTTGGCCTTCACATTGTCAATAGTATCAGAACTTTCCACCTCAAGGGT 365 Query 29748 TATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| |||||||| || | ||||| ||||| || ||||| Sbjct 364 TATTGTTTTGCCGGTGAGAGTTTTCACAAAGATTTGCAT 326 Score = 113 bits (124), Expect = 3e-20 Identities = 155/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| ||||||||||| | || ||||| || ||||| || || ||||| | ||||| Sbjct 769 ACGGAGCACCAAATGCAATGTTGATTCCTTCTGAATATTGTAGTCCGCCAAAGTGCGGCC 710 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || |||||||| ||||| | || | ||| ||||| || || || || |||||||| Sbjct 709 ATCTTCAAGTTGTTTACCAGCGAAAATTAGTCTCTGCTGGTCAGGGGGGATTCCCTCTTT 650 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||||| | || || ||| | || | || ||||| ||| || || | || || Sbjct 649 ATCTTGGATCTTAGCCTTCACATTATCGATGGTATCAGAGCTTTCCACCTCTAAGGTGAT 590 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||||| ||||| | |||||| || || || |||||| Sbjct 589 GGTTTTACCAGTGAGGGTTTTCACGAAGATTTGCATT 553 >seq126021 Length=250 Score = 156 bits (172), Expect = 3e-33 Identities = 167/218 (77%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| ||||| | ||||| ||||| || ||||||||||| ||||| || | || ||| Sbjct 232 ACGGAGCACAAGGTGAAGAGTGGACTCCTTTTGAATGTTGTAATCGGCTAGTGTACGACC 173 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| ||||| || ||||| ||| | ||||| |||||||||||||| |||||||| || || Sbjct 172 ATCTTCGAGCTGCTTGCCTGCAAAGATCAACCTTTGCTGATCCGGGGGAATACCTTCCTT 113 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 |||||| ||| || | ||||||| | || | |||||||| ||| ||||| || || | Sbjct 112 GTCTTG-AATCTTAGCTTTGACATTGTCGATTGTGTCAGAGCTTTCAACTTCTAGTGTAA 54 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 |||| || || || | ||||| || || || |||||| Sbjct 53 TAGTCTTCCCCGTGAGCGTTTTGACGAAAATTTGCATT 16 >seq21568 Length=652 Score = 145 bits (160), Expect = 6e-30 Identities = 164/217 (76%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || ||||||||||| || || ||||| ||||| ||||| ||||| || | || | | Sbjct 323 CGAAGCACCAAATGCAGAGTTGATTCCTTTTGGATGTTGTAATCTGCTAGAGTTCTGCCA 382 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || ||||| ||||| ||| | |||| || ||||| || || || || ||||||||| Sbjct 383 TCTTCCAGTTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGTGGGATTCCCTCTTTG 442 Query 29692 TCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||||| ||| ||||| || ||| | || | ||||| ||| ||||||||| | ||| || Sbjct 443 TCTTG-AATCTTTGTCTTCACATTGTCGATGGTGTCGGAACTTTCTACTTCCAAAGTGAT 501 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || |||||||| || || || || || ||||||||| Sbjct 502 GGTCTTGCCAGTCAATGTCTTCACGAAAATCTGCATT 538 >seq279770 Length=767 Score = 141 bits (156), Expect = 7e-29 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || |||||||| || || ||||| || ||||| || || || || | || ||| Sbjct 625 ACGAAGAACCAAATGCAGGGTAGATTCCTTCTGAATATTGTAGTCGGCGAGAGTTCGACC 566 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || || || || || |||||| | |||| ||| || ||||| || || |||||||| || Sbjct 565 GTCCTCAAGCTGCTTACCAGCAAAAATCAGTCTCTGTTGATCAGGTGGGATACCCTCCTT 506 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | ||| |||||| | || | || |||||| ||| || |||||||| || Sbjct 505 GTCTTGGATTTTAGCCTTGACATTGTCAATTGTATCAGAACTTTCCACCTCAAGAGTAAT 446 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||||||||| | ||| || |||||||| ||||| Sbjct 445 GGTTTTGCCAGTAAGGGTCTTCACAAATATTTGCAT 410 Score = 116 bits (128), Expect = 3e-21 Identities = 155/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 ||||||||||| || || ||||| || || || || ||||| |||| || || || Sbjct 393 AGCACCAAATGGAGTGTAGATTCCTTCTGGATATTGTAATCGGCAAGCGTTCGGCCGTCC 334 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || ||||| || |||||| | || | || || || || || ||||| |||||||| ||| Sbjct 333 TCAAGTTGCTTACCAGCAAAGATAAGCCTCTGTTGGTCGGGTGGAATGCCCTCTTTATCT 274 Query 29695 TGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || ||| |||| || ||| | || | ||||| || ||| || || || || || || Sbjct 273 TG-AATCTTTGCCTTTACATTGTCAATTGTGTCTGAGCTTTCCACCTCGAGGGTGATTGT 215 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||||||| | |||||| || || || ||||| Sbjct 214 TTTGCCAGTGAGGGTTTTTACGAAGATTTGCAT 182 Score = 86.0 bits (94), Expect = 5e-12 Identities = 99/131 (76%), Gaps = 2/131 (2%) Strand=Plus/Minus Query 29657 TCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTT 29715 |||| || || || || || ||||| ||||| || ||||| ||| || | ||| ||| | Sbjct 767 TCAACCTCTGTTGGTCAGGTGGAATGCCCTCCTTATCTTG-AATCTTAGCTTTCACATTA 709 Query 29716 TCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACA 29775 || | || ||||| || ||||| | ||| || ||||||||||| |||||||| ||| Sbjct 708 TCAATTGTATCAGAGCTCTCCACTTCCAAAGTAATTGTTTTGCCAGTCAAGGTTTTCACA 649 Query 29776 AATATCTGCAT 29786 || |||||||| Sbjct 648 AAAATCTGCAT 638 >seq280556 Length=777 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | | |||||||||||| ||||| || ||||| ||||||||||||||||| || Sbjct 535 CCTCCACGAAGACGCAGCACCAAGTGAAGTGTCGATTCCTTTTGAATGTTATAATCGGCT 594 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | ||| || | ||| || ||||| | || || ||||| || || || || Sbjct 595 AAAGTCCTGCCATCTTCCAATTGCTTCCCAGCGAAAATTAACCTTTGTTGGTCTGGTGGG 654 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || ||||| ||||| | || ||| || | || | ||| || ||| || ||| Sbjct 655 ATCCCTTCTTTATCTTGGATCTTAGCTTTAACGTTATCAATAGTATCTGAACTCTCAACT 714 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || | ||| || ||||| || |||||||| || ||||| || |||||| Sbjct 715 TCCAAAGTGATTGTTTTTCCTGTTAAGGTCTTCACAAAAATTTGCATT 762 Score = 118 bits (130), Expect = 8e-22 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 29584 TGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGT 29643 || || |||||||| ||||||||||| || || || | || || ||| || | ||| Sbjct 331 TGGAGGGTGGATTCCTTTTGAATGTTGTAGTCAGCCAATGTACGTCCATCCTCCAATTGC 390 Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 || ||||| | |||| ||||||||| || || ||||||||||| ||||| || | ||| Sbjct 391 TTCCCAGCGAAAATCAGTCTTTGCTGGTCAGGAGGAATACCCTCCTTGTCCTGGATTTTA 450 Query 29704 TGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTT 29763 || ||| | || | |||||| || || ||||| | || || || || || ||| Sbjct 451 GCCTTCACATTGTCGATAGTGTCTGAGCTCTCAACTTCTAATGTGATGGTCTTTCCTGTT 510 Query 29764 AAGGTTTTAACAAATATCTGCAT 29786 ||||| || |||||||| ||||| Sbjct 511 AAGGTCTTCACAAATATTTGCAT 533 >seq281664 Length=792 Score = 113 bits (124), Expect = 3e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||||||||||| ||| || || | ||||| || || || || |||||||| || || || Sbjct 321 TCCTCCCCTCAGACGAAGGACAAGGTGAAGGGTTGACTCCTTCTGAATGTTGTAGTCAGC 380 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 || || | ||| || || || || || ||| | |||||||||||||| || || || Sbjct 381 AAGAGTCCTTCCATCCTCCAGCTGCTTTCCGGCAAAGATCAATCTTTGCTGGTCTGGGGG 440 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 || || || ||||| || |||||||| || || | || | || ||||| || | Sbjct 441 GATGCCTTCCTTGTCCTG-AATTTTTGCCTTCACGTTGTCGATGGTATCAGAGCTCTCGA 499 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || || || || || || ||||| || || ||||| || |||||||| Sbjct 500 CCTCGAGGGTGATGGTCTTTCCAGTCAAAGTCTTAACGAAGATCTGCAT 548 >seq44495 Length=1402 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||||| ||| | ||||| || || || || || ||||||||||| |||| ||| ||| Sbjct 1159 ACGCAACACAAGGTGAAGAGTCGACTCCTTCTGGATGTTATAATCGGCAAGGGTACGACC 1218 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || ||||| || || || | || | ||||||||| || || ||||||||||| || Sbjct 1219 ATCCTCTAGTTGCTTCCCGGCGAAGATAAGTCTTTGCTGGTCTGGGGGAATACCCTCCTT 1278 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||| || | ||| || || | || | || ||||| ||| || || || || || Sbjct 1279 GTCCTGGATCTTTGCCTTAACGTTATCGATGGTATCAGAGGATTCAACCTCGAGGGTGAT 1338 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || || | ||| || || || || ||||| Sbjct 1339 GGTTTTACCTGTCAGGGTCTTTACGAAAATTTGCAT 1374 Score = 105 bits (116), Expect = 5e-18 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 |||||| || | ||||| ||||| || || |||||||| ||||| || | || | Sbjct 703 ACGCAGGACGAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGCGAGAGTCCTTCC 762 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || || || || ||||| | |||| || ||||||||||| || || || || || Sbjct 763 ATCCTCAAGCTGCTTCCCAGCGAAGATCAGCCTCTGCTGATCCGGAGGGATGCCTTCCTT 822 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||| || |||||| | ||| ||| | || | |||||||| || || || || || | Sbjct 823 GTCCTG-AATTTTAGCTTTCACATTATCGATCGTGTCAGAGCTCTCCACCTCCAGGGTGA 881 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || || || || ||||| || || || |||||||| Sbjct 882 TGGTCTTTCCGGTCAAGGTCTTCACGAAGATCTGCAT 918 >seq277496 Length=739 Score = 98.7 bits (108), Expect = 8e-16 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 |||||||| | | || ||||| ||||| || || || ||||| ||||||||||| ||| Sbjct 276 CCTCCCCTAAGCCTCAAGACCAAGTGAAGGGTTGACTCCTTTTGGATGTTATAATCTGCA 217 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || ||| ||| || | ||| || |||||| | || ||||| ||||| || || ||| Sbjct 216 AGCGTTCGACCATCTTCCAATTGCTTACCAGCAAAAATTAATCTCTGCTGGTCAGGAGGA 157 Query 29680 ATACCCTCTTTGTCTTG 29696 ||||| || ||||| || Sbjct 156 ATACCTTCCTTGTCCTG 140 >seq124980 Length=249 Score = 87.8 bits (96), Expect = 1e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 29584 TGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGT 29643 ||||| || |||||||| || ||||| || || |||| || || ||| || ||||| Sbjct 135 TGAAGAGTTGATTCTTTCTGGATGTTGTAGTCGGCAAGAGTTCGGCCATCCTCAAGTTGC 76 Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTG 29696 ||||| ||| | ||||||| |||||||||||| ||||| || || || || || Sbjct 75 TTGCCGGCAAAGATCAATCGTTGCTGATCCGGGGGAATTCCTTCCTTATCCTG 23 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 383786742180792