Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_023500.1 Length=43301 Score E Sequences producing significant alignments: (Bits) Value seq224806 251 2e-62 >seq224806 Length=425 Score = 251 bits (278), Expect = 2e-62 Identities = 309/422 (73%), Gaps = 0/422 (0%) Strand=Plus/Minus Query 39837 TCGATGAATCAAGATTTATATCAAGATACATTGTACGGTCAACGTGTTGGAAACTATAAA 39896 || ||||| ||||| || ||||||||||| | || || |||||||| || |||||| | Sbjct 423 TCAATGAACCAAGACTTGTATCAAGATACGCTATATGGACAACGTGTAGGTAACTATTCA 364 Query 39897 GATTATGGCATGTACTGGATTAAAAGCGAAGTCAAACCGGATGCAATCATAGAGTTTCAT 39956 ||||| || | || ||| |||||| | || ||||| |||| || |||| || || Sbjct 363 GATTACGGTTTATATTGGGTTAAAAAGAACGTGAAACCTGATGTGATTGTAGAATTCCAC 304 Query 39957 TTAGATTCTGCTAGCCCACAAGCAAGTGGCGGGCATGTAATCATTAGCGATCGTTTCCCA 40016 |||||| ||||||| ||||||||||||||||| ||||| || | ||||| | | || Sbjct 303 TTAGATGCTGCTAGTCCACAAGCAAGTGGCGGACATGTCATTGTAAGCGACAGATATCCT 244 Query 40017 GCTGATGACATTGACAAGGCATTAAGTAGTGCATTAGATAAAACAGTGGGTAAAATAAGA 40076 || || || || ||||| || || ||| || ||| ||| ||||| || ||||| ||| Sbjct 243 GCAGACGATATAGACAAAGCGGTATCTAGCGCTCTAGGTAAGACAGTTGGCAAAATTAGA 184 Query 40077 GGTGTGACACCTAGAGGGGATTTATTGAACGCTAACGTGTCTGCTGATCTTAATCTTAAT 40136 || |||||||||||| |||||||| || |||||||| ||| | || ||| | ||| Sbjct 183 GGCGTGACACCTAGAAACGATTTATTAAATGCTAACGTTACTGGACAACTCAATTTAAAT 124 Query 40137 TATCGTTTAATCGAATTAGGTTTTATCACATCTACGAAAGATTTAAACTACATTAAAAAC 40196 ||| | |||||||| ||||||||||| || || || ||| | |||| || | | Sbjct 123 TATAGATTAATCGAGTTAGGTTTTATAACTAGTAAAAAGGATATGGACTATATCACTACA 64 Query 40197 AATTTAGACAGCTTCACGAAGCGGATTGCTGAAGCCATTAACGGCAGACAAATTGATGCG 40256 | |||| || || || ||||| ||||| || || || || || || ||||| ||||| Sbjct 63 CACCTAGATAGTTTTACTAAGCGTATTGCAGAGGCTATCAATGGTAGGCAAATCAATGCG 4 Query 40257 CC 40258 || Sbjct 3 CC 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137939997702672