Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19]
305,112 sequences; 176,727,258 total letters
Query= NC_023681.1
Length=152710
Score E
Sequences producing significant alignments: (Bits) Value
seq21568 102 8e-17
seq279770 98.7 1e-15
seq281289 87.8 2e-12
seq126021 87.8 2e-12
seq44495 86.0 6e-12
>seq21568
Length=652
Score = 102 bits (112), Expect = 8e-17
Identities = 150/210 (71%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 137203 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCTCATTGTGCTCGAGTCTTC 137261
|| ||||| | || ||||| ||||| ||||||||||| ||| | || || |||||
Sbjct 329 ACCAAATGCAGAGTTGATTCCTTTTGGATGTTGTAATCTGCT-AGAGTTCTGCCATCTTC 387
Query 137262 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 137321
||||| || || ||| ||||||| | ||||| || || || || || ||||||||
Sbjct 388 CAGTTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGTGGGATTCCCTCTTTGTCTTG 447
Query 137322 AATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTT 137381
||| ||| || | | || | ||||| | ||||||||| | ||| | |||||
Sbjct 448 AATCTTTGTCTTCACATTGTCGATGGTGTCGGAACTTTCTACTTCCAAAGTGATGGTCTT 507
Query 137382 GCCGGTCAATGTTTTTACGAATATTTGCAT 137411
||| |||||||| || ||||| || |||||
Sbjct 508 GCCAGTCAATGTCTTCACGAAAATCTGCAT 537
>seq279770
Length=767
Score = 98.7 bits (108), Expect = 1e-15
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 137203 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 137262
|| ||||| | ||||||||| || || || ||||||||| | || | ||| ||
Sbjct 390 ACCAAATGGAGTGTAGATTCCTTCTGGATATTGTAATCGGCAAGCGTTCGGCCGTCCTCA 331
Query 137263 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 137322
||||| ||||||||| |||| || | || || ||||| || ||||| ||||| || |
Sbjct 330 AGTTGCTTACCAGCAAAGATAAGCCTCTGTTGGTCGGGTGGAATGCCCTCTTTATCTTGA 271
Query 137323 ATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTG 137382
|| ||| |||| | || | ||||||| | ||| || || | || | || |||
Sbjct 270 ATCTTTGCCTTTACATTGTCAATTGTGTCTGAGCTTTCCACCTCGAGGGTGATTGTTTTG 211
Query 137383 CCGGTCAATGTTTTTACGAATATTTGCAT 137411
|| || | ||||||||||| ||||||||
Sbjct 210 CCAGTGAGGGTTTTTACGAAGATTTGCAT 182
>seq281289
Length=787
Score = 87.8 bits (96), Expect = 2e-12
Identities = 158/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244
|| || |||||||| | || || |||| || ||||||||||||||||| ||||||
Sbjct 552 CCACCACGTAAACGGAGCACCAAGTGAAGGGTTGATTCTTTTTGTATGTTATAATCGGCG 493
Query 137245 ATTGTGCTCGA--GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 137302
| | | |||| || ||||| || || |||||| | || || | |||||| || ||||
Sbjct 492 A--GGGTTCGACCATCCTCGAGCTGCTTTCCAGCAAAAATAAGCCTTTGCTGGTCTGGAG 435
Query 137303 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTA 137362
| || || ||||| || |||||| || | | || | || || | ||| |
Sbjct 434 GGATTCCCTCTTTATCCTGAATTTTGGCCTTCACATTGTCAATAGTATCAGAACTTTCCA 375
Query 137363 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411
| |||| || | || |||||||| | ||||| || || ||||||||
Sbjct 374 CCTCAAGGGTTATTGTTTTGCCGGTGAGAGTTTTCACAAAGATTTGCAT 326
>seq126021
Length=250
Score = 87.8 bits (96), Expect = 2e-12
Identities = 141/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 137209 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 137268
|||| || || || ||||| |||||||||||| | ||| | |||||||| ||
Sbjct 219 TGAAGAGTGGACTCCTTTTGAATGTTGTAATCGGCTAGTGTACGACCATCTTCGAGCTGC 160
Query 137269 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 137328
|| || ||| |||||| | ||||||||| || || || ||||| ||||| ||| ||
Sbjct 159 TTGCCTGCAAAGATCAACCTTTGCTGATCCGGGGGAATACCTTCCTTGTCTTGAATCTTA 100
Query 137329 TGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 137388
||| | | || | ||||| | | ||| ||||| | || | ||||| || ||
Sbjct 99 GCTTTGACATTGTCGATTGTGTCAGAGCTTTCAACTTCTAGTGTAATAGTCTTCCCCGTG 40
Query 137389 AATGTTTTTACGAATATTTGCAT 137411
| ||||| ||||| ||||||||
Sbjct 39 AGCGTTTTGACGAAAATTTGCAT 17
>seq44495
Length=1402
Score = 86.0 bits (94), Expect = 6e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244
|| || || | ||||| || | |||| || || || || || |||||||||||
Sbjct 692 CCACCACGGAGACGCAGGACGAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGCG 751
Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304
| || || || || || || || ||||| ||||||| | |||||||| |||||
Sbjct 752 AGAGTCCTTCCATCCTCAAGCTGCTTCCCAGCGAAGATCAGCCTCTGCTGATCCGGAGGG 811
Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364
|||||||| ||||| |||||| ||| | | || | |||||| | | || ||
Sbjct 812 ATGCCTTCCTTGTCCTGAATTTTAGCTTTCACATTATCGATCGTGTCAGAGCTCTCCACC 871
Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411
|| | || | ||||| |||||||| || || ||||| || |||||
Sbjct 872 TCCAGGGTGATGGTCTTTCCGGTCAAGGTCTTCACGAAGATCTGCAT 918
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 486680742038400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |