Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq21568 168 1e-36 seq280556 163 6e-35 seq281289 154 3e-32 seq281664 152 1e-31 seq44495 152 1e-31 seq279770 138 2e-27 seq126021 125 1e-23 seq122851 114 3e-20 seq48980 105 1e-17 seq124980 102 2e-16 >seq21568 Length=652 Score = 168 bits (186), Expect = 1e-36 Identities = 167/216 (77%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || || |||||||| ||||| || || || || ||||| | |||| |||| || Sbjct 323 CGAAGCACCAAATGCAGAGTTGATTCCTTTTGGATGTTGTAATCTGCTAGAGTTCTGCCA 382 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| ||||| || || |||||||| || || || || || || || ||||| || || Sbjct 383 TCTTCCAGTTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGTGGGATTCCCTCTTTG 442 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 ||||||||||||| || ||||| || || || || | ||||||||||||||| || Sbjct 443 TCTTGAATCTTTGTCTTCACATTGTCGATGGTGTCGGAACTTTCTACTTCCAAAGTGATG 502 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||||||| ||||| ||||| || || ||||||||| Sbjct 503 GTCTTGCCAGTCAATGTCTTCACGAAAATCTGCATT 538 Score = 127 bits (140), Expect = 4e-24 Identities = 114/143 (80%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || | ||| || || || |||||||| ||||| ||||||| | | | | ||| Sbjct 101 CGGAGGACAAGGTGGAGGGTGGACTCTTTCTGAATATTGTAATCAGCCAAAGTCCGACCA 160 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || | |||||||||||||||||| | ||| |||||||||||||| || || ||||| Sbjct 161 TCCTCCAATTGTTTTCCAGCAAAGATCAATCTCTGTTGATCTGGAGGAATCCCCTCCTTG 220 Query 82716 TCTTGAATCTTTGCTTTTACATT 82738 |||||||||||||| || ||||| Sbjct 221 TCTTGAATCTTTGCCTTCACATT 243 >seq280556 Length=777 Score = 163 bits (180), Expect = 6e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | | |||||| || ||||| || || ||||| || || || |||||||| | | Sbjct 535 CCTCCACGAAGACGCAGCACCAAGTGAAGTGTCGATTCCTTTTGAATGTTATAATCGGCT 594 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | || || ||||| | ||| || ||||| || |||| |||||||| ||||| || Sbjct 595 AAAGTCCTGCCATCTTCCAATTGCTTCCCAGCGAAAATTAACCTTTGTTGGTCTGGTGGG 654 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||| |||||||| ||||| ||||| || || ||||| ||||| | || ||| Sbjct 655 ATCCCTTCTTTATCTTGGATCTTAGCTTTAACGTTATCAATAGTATCTGAACTCTCAACT 714 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||||||| || || || ||||| || ||||| ||||| || |||||| Sbjct 715 TCCAAAGTGATTGTTTTTCCTGTTAAGGTCTTCACAAAAATTTGCATT 762 >seq281289 Length=787 Score = 154 bits (170), Expect = 3e-32 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 82593 AAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTA 82652 ||||| || || ||||| || || |||||||| ||||| |||||||| | || ||| | Sbjct 543 AAACGGAGCACCAAGTGAAGGGTTGATTCTTTTTGTATGTTATAATCGGCGAGGGTTCGA 484 Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 || || || || || ||||||||||| || || ||||| || |||||||| ||||| || Sbjct 483 CCATCCTCGAGCTGCTTTCCAGCAAAAATAAGCCTTTGCTGGTCTGGAGGGATTCCCTCT 424 Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTT 82772 ||||| ||||| || || || ||||| ||||| |||||| | ||| || || | ||| Sbjct 423 TTATCCTGAATTTTGGCCTTCACATTGTCAATAGTATCAGAACTTTCCACCTCAAGGGTT 364 Query 82773 ATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || ||||| || | || || ||||| || ||||| Sbjct 363 ATTGTTTTGCCGGTGAGAGTTTTCACAAAGATTTGCAT 326 >seq281664 Length=792 Score = 152 bits (168), Expect = 1e-31 Identities = 164/217 (76%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || | ||| || ||||| || ||||| || || ||||||| || | || || Sbjct 105 ACGGAGGACAAGGTGAAGGGTAGACTCCTTCTGAATGTTGTAATCAGCAAGGGTCCTTCC 164 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| || || |||||||||||||| | | || || |||||||| ||||||||||| Sbjct 165 ATCTTCCAGCTGCTTTCCAGCAAAGATCAACCGCTGCTGGTCTGGAGGAATTCCTTCCTT 224 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 || || || ||||| || ||||| || || |||||| | || || ||||| || || Sbjct 225 GTCCTGGATTTTTGCCTTAACATTGTCGATTGTATCAGAACTCTCCACCTCCAAGGTGAT 284 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||||| ||||||| ||||| ||||| ||||||||| Sbjct 285 GGTCTTCCCTGTCAGGGTCTTGACAAAGATCTGCATT 321 Score = 134 bits (148), Expect = 3e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||||| || | || |||||||| || ||||| || || || || | Sbjct 548 TACCACCACGGAGACGCAAGACAAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCTG 607 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||| ||| ||||| || | ||||||||||| ||||| ||||| ||||| ||||| | Sbjct 608 CAAGAGTTCGGCCGTCCTCCAACTGTTTTCCAGCGAAGATGAGTCTCTGTTGGTCTGGGG 667 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| || |||||||| || || || || ||||| || || || || | Sbjct 668 GGATACCTTCCTTGTCCTGAATCTTGGCCTTCACGTTGTCAATTGTGTCTGAAGACTCAA 727 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | ||||| || || ||||| || || | || || ||||| || ||||| Sbjct 728 CCTCCAAGGTGATGGTCTTTCCGGTGAGAGTTTTGACAAAAATTTGCAT 776 >seq44495 Length=1402 Score = 152 bits (168), Expect = 1e-31 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || || | ||| || || |||||||| || || || ||||| || ||||| |||| Sbjct 920 CCACCCCTGAGACGAAGCACCAAGTGCAGGGTTGACTCCTTCTGGATGTTATAGTCAGCC 979 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | ||||| ||||| || || |||||||| ||||| || || || || ||||| || Sbjct 980 AAAGTCCTACCATCTTCCAGCTGCTTTCCAGCGAAGATCAGCCTCTGCTGGTCTGGTGGG 1039 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||| ||||| ||||| ||||| || || || || ||||| || || | || || Sbjct 1040 ATTCCCTCCTTGTCTTGGATCTTAGCCTTGACGTTGTCAATGGTGTCCGAACTCTCAACC 1099 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || || || |||||||| ||||||||||| || || |||||||| Sbjct 1100 TCTAAGGTGATGGTCTTGCCGGTCAACGTCTTGACGAAAATCTGCAT 1146 >seq279770 Length=767 Score = 138 bits (152), Expect = 2e-27 Identities = 160/213 (75%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658 || || || || || |||||||| ||||| ||||| ||||| | || ||| ||||| Sbjct 393 AGCACCAAATGGAGTGTAGATTCCTTCTGGATATTGTAATCGGCAAGCGTTCGGCCGTCC 334 Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718 || ||||| || ||||||||||| || || ||||| || || || || || || |||||| Sbjct 333 TCAAGTTGCTTACCAGCAAAGATAAGCCTCTGTTGGTCGGGTGGAATGCCCTCTTTATCT 274 Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAG-GTTCTACTTCCAAAGTTATCGT 82777 ||||||||||| |||||||| ||||| || || | || ||| || || | || || || Sbjct 273 TGAATCTTTGCCTTTACATTGTCAATTGTGTC-TGAGCTTTCCACCTCGAGGGTGATTGT 215 Query 82778 CTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || | || ||||| || || ||||| Sbjct 214 TTTGCCAGTGAGGGTTTTTACGAAGATTTGCAT 182 Score = 113 bits (124), Expect = 9e-20 Identities = 102/126 (81%), Gaps = 2/126 (2%) Strand=Plus/Minus Query 82686 CTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATC 82745 || ||||| || || || || || ||||||||||||||||| ||||| ||||| ||||| Sbjct 762 CTCTGTTGGTCAGGTGGAATGCCCTCCTTATCTTGAATCTTAGCTTTCACATTATCAATT 703 Query 82746 GTATCATTAGGT-TCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATAT 82804 |||||| || | || ||||||||||| || || ||||| ||||| || || ||||| || Sbjct 702 GTATCAG-AGCTCTCCACTTCCAAAGTAATTGTTTTGCCAGTCAAGGTTTTCACAAAAAT 644 Query 82805 CTGCAT 82810 |||||| Sbjct 643 CTGCAT 638 >seq126021 Length=250 Score = 125 bits (138), Expect = 1e-23 Identities = 158/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || | ||| ||||| || || || || || || ||||| | ||| | | ||| Sbjct 232 ACGGAGCACAAGGTGAAGAGTGGACTCCTTTTGAATGTTGTAATCGGCTAGTGTACGACC 173 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| || || || || |||||||| | ||||| ||||| || || || |||||||| Sbjct 172 ATCTTCGAGCTGCTTGCCTGCAAAGATCAACCTTTGCTGATCCGGGGGAATACCTTCCTT 113 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||||||||||| ||||| ||||| || || || ||| ||| ||||| | || || Sbjct 112 GTCTTGAATCTTAGCTTTGACATTGTCGATTGTGTCAGAGCTTTCAACTTCTAGTGTAAT 53 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||||| || || | ||| || || || || |||||| Sbjct 52 AGTCTTCCCCGTGAGCGTTTTGACGAAAATTTGCATT 16 >seq122851 Length=247 Score = 114 bits (126), Expect = 3e-20 Identities = 101/126 (80%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 82686 CTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATC 82745 || ||||| || || || || || ||||||||||||||||| ||||| ||||| ||||| Sbjct 244 CTCTGTTGGTCAGGTGGGATACCCTCCTTATCTTGAATCTTGGCTTTCACATTGTCAATG 185 Query 82746 GTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATC 82805 || || | ||| |||||||| || |||||||| ||||| || ||||| ||||| ||| Sbjct 184 GTGTCTGAACTTTCGACTTCCAATGTGATCGTCTTCCCTGTTAAGGTCTTCACAAAAATC 125 Query 82806 TGCATT 82811 |||||| Sbjct 124 TGCATT 119 >seq48980 Length=3483 Score = 105 bits (116), Expect = 1e-17 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || || || || || ||||| || || || || | || ||| ||| || || | || Sbjct 1026 TGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGTGTTCGACCATCCTCCATCTGC 967 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || || || || || || | || || || || |||||||| |||||||| ||||||||| Sbjct 966 TTACCGGCGAAAATGAGACGCTGCTGGTCCGGCGGTATTCCCTCCTTATCCTGAATCTTT 907 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || || ||||| || || |||||| | || || || | |||||| ||||| || || Sbjct 906 GCCTTGACATTATCGATGGTATCAGAACTCTCGACCTCGAGAGTTATGGTCTTCCCGGTA 847 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | ||| || || || |||||||| Sbjct 846 AGCGTTTTCACGAAGATCTGCAT 824 >seq124980 Length=249 Score = 102 bits (112), Expect = 2e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || | ||| ||||| ||||||||||| || || || || | ||| ||| || Sbjct 147 CGTAGGACGAGGTGAAGAGTTGATTCTTTCTGGATGTTGTAGTCGGCAAGAGTTCGGCCA 88 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || ||||| || || |||||||| | || ||| ||||| || || |||||||||||| Sbjct 87 TCCTCAAGTTGCTTGCCGGCAAAGATCAATCGTTGCTGATCCGGGGGAATTCCTTCCTTA 28 Query 82716 TCTTGAATCTTTGCTTTTACATTTTC 82741 || || ||||| || || || || || Sbjct 27 TCCTGGATCTTGGCCTTGACGTTGTC 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 977988994472968