Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq44495 116 4e-21 seq279770 113 4e-20 seq81485 104 2e-17 seq48980 102 8e-17 seq281664 98.7 1e-15 seq281289 95.1 1e-14 >seq44495 Length=1402 Score = 116 bits (128), Expect = 4e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||| ||||| || |||||||| | | || ||||| |||||||| || Sbjct 722 GTGGACTCCTTCTGAATGTTGTAATCAGCGAGAGTCCTTCCATCCTCAAGCTGCTTCCCA 781 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC-TT 133582 ||| | || |||| |||||| || |||||||||||||||||||| ||| ||| || || Sbjct 782 GCGAAGATCAGCCTCTGCTGATCCGGAGGGATGCCTTCCTTGTC-CTGAATTTTAGCTTT 840 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | |||||| | | |||||| || | ||||| ||| || ||||||| || Sbjct 841 CACATTATCGATCGTGTCAGAGCTCTCCACCTCCAGGGTGATGGTCTTTCCGGTCAAGGT 900 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 901 CTTCACGAAGATCTGCAT 918 Score = 109 bits (120), Expect = 5e-19 Identities = 150/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGG-ACGAGTCCTCGAG 133513 || || | ||| ||||| ||||| || || || || ||| || || | || || || Sbjct 941 AAGTGCAGGGTTGACTCCTTCTGGATGTTATAGTCAGCCAAAGTCCTACCA-TCTTCCAG 999 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || ||| | || |||| ||||||||| || ||||| || |||||||| ||| Sbjct 1000 CTGCTTTCCAGCGAAGATCAGCCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTGGAT 1059 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | |||| ||||| | ||| || || | ||||| ||| ||||| Sbjct 1060 CTTAGCCTTGACGTTGTCAATGGTGTCCGAACTCTCAACCTCTAAGGTGATGGTCTTGCC 1119 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| || || |||||||||||||| Sbjct 1120 GGTCAACGTCTTGACGAAAATCTGCAT 1146 Score = 102 bits (112), Expect = 8e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || || |||||| | | || ||| | ||||| || ||||| || Sbjct 1178 GTCGACTCCTTCTGGATGTTATAATCGGCAAGGGTACGACCA-TCCTCTAGTTGCTTCCC 1236 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || | |||||||| || || || || |||||||| ||||||| ||| Sbjct 1237 GGCGAAGATAAGTCTTTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGGATCTTTGCCTT 1296 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | || || | || || || |||| ||||| |||||| || ||||| || Sbjct 1297 AACGTTATCGATGGTATCAGAGGATTCAACCTCGAGGGTGATGGTTTTACCTGTCAGGGT 1356 Query 133643 TTTTACGAAAATCTGCAT 133660 ||||||||||| ||||| Sbjct 1357 CTTTACGAAAATTTGCAT 1374 >seq279770 Length=767 Score = 113 bits (124), Expect = 4e-20 Identities = 151/208 (73%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGA 133512 ||||| | || || || ||||| |||||||||||| | | ||| || || ||||| | Sbjct 387 AAATGGAGTGTAGATTCCTTCTGGATATTGTAATCGGCAAGCGTTCGGCCG--TCCTCAA 330 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 | ||||| || || | || |||| ||| |||||||| || ||||| || || || | Sbjct 329 GTTGCTTACCAGCAAAGATAAGCCTCTGTTGGTCGGGTGGAATGCCCTCTTTATCTTGAA 270 Query 133573 TCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||||| ||| | | |||| ||||| | | ||||| |||| ||||| ||||||| Sbjct 269 TCTTTGCCTTTACATTGTCAATTGTGTCTGAGCTTTCCACCTCGAGGGTGATTGTTTTGC 210 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | || || ||||||||||| || ||||| Sbjct 209 CAGTGAGGGTTTTTACGAAGATTTGCAT 182 >seq81485 Length=213 Score = 104 bits (114), Expect = 2e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 |||||||| ||||| || ||| | ||||| || |||||||| || || || ||||||||| Sbjct 212 TCCTCGAGTTGCTTTCCGGCGAAGATGAGACGTTGCTGGTCAGGGGGAATTCCTTCCTTG 153 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||||| | || | ||| || | | ||| || || | ||||| | Sbjct 152 TCCTGGATCTTGGACTTGACGTTGTCGATCGTATCAGATGACTCAACCTCAAGGGTGATG 93 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || |||||||| || ||||| ||||| || ||||| Sbjct 92 GTCTTGCCGGTTAGGGTTTTAACGAAGATTTGCAT 58 >seq48980 Length=3483 Score = 102 bits (112), Expect = 8e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| || ||||| ||| | | || ||| | ||||| | |||||| || Sbjct 1020 GTGGACTCCTTCTGGATGTTGTAGTCGGCAAGTGTTCGACCA-TCCTCCATCTGCTTACC 962 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| ||||||| ||||||||||| || || || || ||||| || |||||| ||| Sbjct 961 GGCGAAAATGAGACGCTGCTGGTCCGGCGGTATTCCCTCCTTATCCTGAATCTTTGCCTT 902 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | || || | ||| || |||| || | ||| || ||||| || || Sbjct 901 GACATTATCGATGGTATCAGAACTCTCGACCTCGAGAGTTATGGTCTTCCCGGTAAGCGT 842 Query 133643 TTTTACGAAAATCTGCAT 133660 ||| ||||| |||||||| Sbjct 841 TTTCACGAAGATCTGCAT 824 >seq281664 Length=792 Score = 98.7 bits (108), Expect = 1e-15 Identities = 143/200 (72%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGAGCTGCTTGC 133521 || ||||| ||||| || ||||| || | | || || || ||||| | ||| || | Sbjct 580 GTAGACTCCTTCTGGATGTTGTAGTCTGCAAGAGTTCGGCCG--TCCTCCAACTGTTTTC 637 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | ||||| | ||| ||||| || ||||| ||||||||||| ||||| || Sbjct 638 CAGCGAAGATGAGTCTCTGTTGGTCTGGGGGGATACCTTCCTTGTCCTGAATCTTGGCCT 697 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | |||| ||||| | | ||| || || | ||||| ||| || ||||| |||| Sbjct 698 TCACGTTGTCAATTGTGTCTGAAGACTCAACCTCCAAGGTGATGGTCTTTCCGGTGAGAG 757 Query 133642 TTTTTACGAAAATCTGCATG 133661 |||| || ||||| |||||| Sbjct 758 TTTTGACAAAAATTTGCATG 777 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||| ||||| ||||| || |||||||| | | || || || |||||||| || Sbjct 123 GGTAGACTCCTTCTGAATGTTGTAATCAGCAAGGGTCCTTCCATCTTCCAGCTGCTTTCC 182 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || | |||||||||||| ||||| || ||||||||||| ||| ||| ||| Sbjct 183 AGCAAAGATCAACCGCTGCTGGTCTGGAGGAATTCCTTCCTTGTCCTGGATTTTTGCCTT 242 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | || || | |||||| || | ||||| ||| || || ||||| || Sbjct 243 AACATTGTCGATTGTATCAGAACTCTCCACCTCCAAGGTGATGGTCTTCCCTGTCAGGGT 302 Query 133643 TTTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 303 CTTGACAAAGATCTGCAT 320 Score = 86.0 bits (94), Expect = 6e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||| ||||| ||||| || ||||| || | | || ||||| |||||||| || Sbjct 351 GGTTGACTCCTTCTGAATGTTGTAGTCAGCAAGAGTCCTTCCATCCTCCAGCTGCTTTCC 410 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTG-CT 133581 || | || | | |||||||| || ||||||||||||||||| ||| ||||| || Sbjct 411 GGCAAAGATCAATCTTTGCTGGTCTGGGGGGATGCCTTCCTTGTC-CTGAATTTTTGCCT 469 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | || | || || | | ||| || |||| ||||| ||| || || |||| || Sbjct 470 TCACGTTGTCGATGGTATCAGAGCTCTCGACCTCGAGGGTGATGGTCTTTCCAGTCAAAG 529 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 530 TCTTAACGAAGATCTGCAT 548 >seq281289 Length=787 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/208 (72%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||| || ||||| ||||| || |||||| | | || ||| | |||||||| Sbjct 531 AAGTGAAGGGTTGATTCTTTTTGTATGTTATAATCGGCGAGGGTTCGACCA-TCCTCGAG 473 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || || |||| |||| |||||||| |||||||| || || || || ||| Sbjct 472 CTGCTTTCCAGCAAAAATAAGCCTTTGCTGGTCTGGAGGGATTCCCTCTTTATC-CTGAA 414 Query 133574 CTTTTG-CTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||| | ||| | | |||| || || | ||||| || | ||| | ||||||| Sbjct 413 TTTTGGCCTTCACATTGTCAATAGTATCAGAACTTTCCACCTCAAGGGTTATTGTTTTGC 354 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| |||||||| || || || ||||| Sbjct 353 CGGTGAGAGTTTTCACAAAGATTTGCAT 326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 481577081410880