Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq273947 109 1e-18 seq218924 87.8 4e-12 seq303880 84.2 5e-11 >seq273947 Length=700 Score = 109 bits (120), Expect = 1e-18 Identities = 279/420 (66%), Gaps = 16/420 (4%) Strand=Plus/Plus Query 131867 GCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTTTGGCTT 131926 || ||||||||||||||||| || ||||| |||||| ||||| | || || ||| | Sbjct 167 GCATTTGCTTGTGTTGAAGGAATCTTCTTCTCAGGTAGCTTCTGCTCCATTTTCTGGTTG 226 Query 131927 AAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGATGAA 131986 || || |||||||| |||||||||||| |||| || ||| | || || || |||| || Sbjct 227 AAAAAACGTGGATTAATGCCTGGACTCACATTCTCAAATGAGTTGATTTCACGAGACGAG 286 Query 131987 GCATTGCATACTGAATTTGCTATATTAATCTATAGAAAATTTGCTG----ATAAACTTGA 132042 | | ||| || |||||| || | ||| | ||| || | ||||| Sbjct 287 GGTCTTCATTGCGATTTTGCTTGTTTGTTGTATTCA----TTGTTGAGGAAGAAACTGAG 342 Query 132043 TGAAAATAATATTAAACAACTTATAAGCGAAGCAGTTGATATCGAGAAGGAGTTTATTAC 132102 ||| ||| | || | || | | |||||| || ||||| |||| ||| || | Sbjct 343 TGAGAATCGAGTGAATGAGATTGTTACCGAAGCCGTAGATATAGAGAGGGAATTCGTGTG 402 Query 132103 AGAAGCTTTGCC--TTGCAATTTGATTGGGATGAATGCTGACTCTATGAAGGAGTACATT 132160 || || ||||| |||| | | |||| ||||||| || | |||| | |||||| Sbjct 403 TGATGCCTTGCCTGTTGC--TCTAGTTGGAATGAATGGCGATTTGATGAGCCAATACATT 460 Query 132161 GAATTCGTTGCTGATCGTTTAATTAACCAACTT--GGATATTCCAAGATTTATAACACCC 132218 ||||| || || ||| | || || | ||| || ||| ||| || ||||| | Sbjct 461 GAATTTGTGGCCGATAGATTGGTT--GGAGCTTTAGGGTATGGCAAAATCTATAATGTTC 518 Query 132219 AAAACCCCTATACATGGATGGAGTCAATTTCGCTTGAAGGTAAAACGAACTTCTTCGAAA 132278 |||| || | | |||||||| | ||||| | |||| || || || ||||| |||| Sbjct 519 AAAATCCATTTGATTGGATGGAATTGATTTCATTGCAAGGGAAGACCAATTTCTTTGAAA 578 >seq218924 Length=406 Score = 87.8 bits (96), Expect = 4e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 131867 GCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTTTGGCTT 131926 || || ||||||||||| || || ||||| |||||| |||||| |||| || ||| | Sbjct 240 GCGTTCGCTTGTGTTGAGGGAATTTTCTTCTCAGGTAGTTTCTGCTCTATTTTCTGGTTA 181 Query 131927 AAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGATGAA 131986 || || ||||| | ||||||||| | | || || ||| | || || || ||||||||| Sbjct 180 AAAAAACGTGGGCTAATGCCTGGATTAACGTTCTCAAATGAGTTGATTTCAAGAGATGAA 121 Query 131987 GCATTGCATACTGAATTTGCT 132007 | | ||| ||| |||||| Sbjct 120 GGGCTTCATTGTGATTTTGCT 100 >seq303880 Length=1948 Score = 84.2 bits (92), Expect = 5e-11 Identities = 131/182 (72%), Gaps = 4/182 (2%) Strand=Plus/Minus Query 305309 CATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCT 305368 ||||| || || ||||| || || || ||| | || || || |||||||||||| Sbjct 298 CATTTAAACGATGGTGATTTTGTACTCTTTAATCGTCAGCCTAGTCTCCATAAAATGTCT 239 Query 305369 ATGATGGCTCATAAAGTCAA-AGTATTATCTGGATTGACATTTCGATTAAATGTAAGTG- 305426 || |||| || | | |||| | ||| || | || || || ||||| || || Sbjct 238 ATTATGGGACACAGAATCAAGATTATGCCCTAC-TCAACTTTCCGTCTAAATTTATCTGT 180 Query 305427 CTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAAT 305486 | || | ||||| ||||| ||||||||||| |||||||||||||||||||| ||||| | Sbjct 179 CACGT-CACCTTACAATGCTGATTTTGATGGTGATGAAATGAATATGCATGTTCCTCAGT 121 Query 305487 CA 305488 || Sbjct 120 CA 119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1182173255028632