Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19]
305,112 sequences; 176,727,258 total letters
Query= NC_024697.1
Length=370920
Score E
Sequences producing significant alignments: (Bits) Value
seq273947 109 1e-18
seq218924 87.8 4e-12
seq303880 84.2 5e-11
>seq273947
Length=700
Score = 109 bits (120), Expect = 1e-18
Identities = 279/420 (66%), Gaps = 16/420 (4%)
Strand=Plus/Plus
Query 131867 GCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTTTGGCTT 131926
|| ||||||||||||||||| || ||||| |||||| ||||| | || || ||| |
Sbjct 167 GCATTTGCTTGTGTTGAAGGAATCTTCTTCTCAGGTAGCTTCTGCTCCATTTTCTGGTTG 226
Query 131927 AAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGATGAA 131986
|| || |||||||| |||||||||||| |||| || ||| | || || || |||| ||
Sbjct 227 AAAAAACGTGGATTAATGCCTGGACTCACATTCTCAAATGAGTTGATTTCACGAGACGAG 286
Query 131987 GCATTGCATACTGAATTTGCTATATTAATCTATAGAAAATTTGCTG----ATAAACTTGA 132042
| | ||| || |||||| || | ||| | ||| || | |||||
Sbjct 287 GGTCTTCATTGCGATTTTGCTTGTTTGTTGTATTCA----TTGTTGAGGAAGAAACTGAG 342
Query 132043 TGAAAATAATATTAAACAACTTATAAGCGAAGCAGTTGATATCGAGAAGGAGTTTATTAC 132102
||| ||| | || | || | | |||||| || ||||| |||| ||| || |
Sbjct 343 TGAGAATCGAGTGAATGAGATTGTTACCGAAGCCGTAGATATAGAGAGGGAATTCGTGTG 402
Query 132103 AGAAGCTTTGCC--TTGCAATTTGATTGGGATGAATGCTGACTCTATGAAGGAGTACATT 132160
|| || ||||| |||| | | |||| ||||||| || | |||| | ||||||
Sbjct 403 TGATGCCTTGCCTGTTGC--TCTAGTTGGAATGAATGGCGATTTGATGAGCCAATACATT 460
Query 132161 GAATTCGTTGCTGATCGTTTAATTAACCAACTT--GGATATTCCAAGATTTATAACACCC 132218
||||| || || ||| | || || | ||| || ||| ||| || ||||| |
Sbjct 461 GAATTTGTGGCCGATAGATTGGTT--GGAGCTTTAGGGTATGGCAAAATCTATAATGTTC 518
Query 132219 AAAACCCCTATACATGGATGGAGTCAATTTCGCTTGAAGGTAAAACGAACTTCTTCGAAA 132278
|||| || | | |||||||| | ||||| | |||| || || || ||||| ||||
Sbjct 519 AAAATCCATTTGATTGGATGGAATTGATTTCATTGCAAGGGAAGACCAATTTCTTTGAAA 578
>seq218924
Length=406
Score = 87.8 bits (96), Expect = 4e-12
Identities = 104/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 131867 GCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTTTGGCTT 131926
|| || ||||||||||| || || ||||| |||||| |||||| |||| || ||| |
Sbjct 240 GCGTTCGCTTGTGTTGAGGGAATTTTCTTCTCAGGTAGTTTCTGCTCTATTTTCTGGTTA 181
Query 131927 AAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGATGAA 131986
|| || ||||| | ||||||||| | | || || ||| | || || || |||||||||
Sbjct 180 AAAAAACGTGGGCTAATGCCTGGATTAACGTTCTCAAATGAGTTGATTTCAAGAGATGAA 121
Query 131987 GCATTGCATACTGAATTTGCT 132007
| | ||| ||| ||||||
Sbjct 120 GGGCTTCATTGTGATTTTGCT 100
>seq303880
Length=1948
Score = 84.2 bits (92), Expect = 5e-11
Identities = 131/182 (72%), Gaps = 4/182 (2%)
Strand=Plus/Minus
Query 305309 CATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCT 305368
||||| || || ||||| || || || ||| | || || || ||||||||||||
Sbjct 298 CATTTAAACGATGGTGATTTTGTACTCTTTAATCGTCAGCCTAGTCTCCATAAAATGTCT 239
Query 305369 ATGATGGCTCATAAAGTCAA-AGTATTATCTGGATTGACATTTCGATTAAATGTAAGTG- 305426
|| |||| || | | |||| | ||| || | || || || ||||| || ||
Sbjct 238 ATTATGGGACACAGAATCAAGATTATGCCCTAC-TCAACTTTCCGTCTAAATTTATCTGT 180
Query 305427 CTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAAT 305486
| || | ||||| ||||| ||||||||||| |||||||||||||||||||| ||||| |
Sbjct 179 CACGT-CACCTTACAATGCTGATTTTGATGGTGATGAAATGAATATGCATGTTCCTCAGT 121
Query 305487 CA 305488
||
Sbjct 120 CA 119
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1182173255028632
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |