Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq281289 93.3 3e-14 seq21568 89.7 3e-13 seq281664 84.2 1e-11 seq126021 82.4 5e-11 >seq281289 Length=787 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | ||||| | |||||| || || || |||||||||||||| ||||||| | Sbjct 552 CCACCACGTAAACGGAGCACCAAGTGAAGGGTTGATTCTTTTTGTATGTTATAATCGGCG 493 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || | || || | || ||||| |||||||| | | ||||| ||| | || Sbjct 492 AGGGTTCGACCATCCTCGAGCTGCTTTCCAGCAAAAATAAGCCTTTGCTGGTCTGGAGGG 433 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || ||||| || |||||| ||| |||| ||| | || || |||||| Sbjct 432 ATTCCCTCTTTATCCTGAATTTTGGCCTTC-ACATTGTCAATAGTATCAGAACTTTCCAC 374 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| || || ||||| || || | ||||| |||||||| ||||| Sbjct 373 CTCAAGGGTTATTGTTTTGCCGGTGAGAGTTTTCACAAAGATTTGCAT 326 >seq21568 Length=652 Score = 89.7 bits (98), Expect = 3e-13 Identities = 166/240 (69%), Gaps = 4/240 (2%) Strand=Plus/Plus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || ||||| | || || | ||||||||| ||||| || ||||| ||| Sbjct 299 AAAATCTGCATCCCACCACGCAGTCGAAGCACCAAATGCAGAGTTGATTCCTTTTGGATG 358 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 |||||||| | || || | | || |||| ||| || || ||||| |||| | |||| Sbjct 359 TTGTAATCTGCTAGAGTTCTGCCATCTTCCAGTTGCTTGCCTGCAAAGATCAGCCTCTGC 418 Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC 33689 || || | || | || |||||||| ||| || ||| | |||| ||| | |||||| Sbjct 419 TGGTCAGGTGGGATTCCCTCTTTGTCTTGAATCTT-TGTCTTCACATTGTCGATGGTGTC 477 Query 33690 GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | ||| || || | ||||| || || || || || || || || || |||||||| Sbjct 478 GGAACTTTCTACTTCCAAAGTGATGGTCTTGCCAGTCAATGTCTTCACGAAAATCTGCAT 537 >seq281664 Length=792 Score = 84.2 bits (92), Expect = 1e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| || || ||||||||||| | || || | | | || |||| || ||||| ||||| Sbjct 129 CTCCTTCTGAATGTTGTAATCAGCAAGGGTCCTTCCATCTTCCAGCTGCTTTCCAGCAAA 188 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 ||||| |||||||| ||| | || | ||||| ||||| ||||| || | ||||| Sbjct 189 GATCAACCGCTGCTGGTCTGGAGGAATTCCTTCCTTGTCCTGGATTTT-TGCCTTAACAT 247 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 ||| | || || ||||| || | ||||| || || ||||| | || || | Sbjct 248 TGTCGATTGTATCAGAACTCTCCACCTCCAAGGTGATGGTCTTCCCTGTCAGGGTCTTGA 307 Query 33737 CAAAGATCTGCAT 33749 ||||||||||||| Sbjct 308 CAAAGATCTGCAT 320 >seq126021 Length=250 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | ||| | || |||||| ||| ||||| ||||||||||||| Sbjct 243 CCACCACGAAGACGGAGCACAAGGTGAAGAGTGGACTCCTTTTGAATGTTGTAATCGGCT 184 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 ||||| || | || || | || || || ||||| ||||| | |||||||| | || Sbjct 183 AGTGTACGACCATCTTCGAGCTGCTTGCCTGCAAAGATCAACCTTTGCTGATCCGGGGGA 124 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATTC 33698 | |||||| ||||| ||| || | || |||| ||| | ||||| ||| ||| Sbjct 123 ATACCTTCCTTGTCTTGAATCTT-AGCTTTGACATTGTCGATTGTGTCAGAGCT---TTC 68 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | || || || || || || | |||||| || || || ||||| Sbjct 67 AACTTCTAGTGTAATAGTCTTCCCCGTGAGCGTTTTGACGAAAATTTGCAT 17 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 327481696919040