Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19]
305,112 sequences; 176,727,258 total letters
Query= NC_025257.1
Length=102759
Score E
Sequences producing significant alignments: (Bits) Value
seq281289 93.3 3e-14
seq21568 89.7 3e-13
seq281664 84.2 1e-11
seq126021 82.4 5e-11
>seq281289
Length=787
Score = 93.3 bits (102), Expect = 3e-14
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
||||| | ||||| | |||||| || || || |||||||||||||| ||||||| |
Sbjct 552 CCACCACGTAAACGGAGCACCAAGTGAAGGGTTGATTCTTTTTGTATGTTATAATCGGCG 493
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
|| || || | || || | || ||||| |||||||| | | ||||| ||| | ||
Sbjct 492 AGGGTTCGACCATCCTCGAGCTGCTTTCCAGCAAAAATAAGCCTTTGCTGGTCTGGAGGG 433
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| || ||||| || |||||| ||| |||| ||| | || || ||||||
Sbjct 432 ATTCCCTCTTTATCCTGAATTTTGGCCTTC-ACATTGTCAATAGTATCAGAACTTTCCAC 374
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|||| || || ||||| || || | ||||| |||||||| |||||
Sbjct 373 CTCAAGGGTTATTGTTTTGCCGGTGAGAGTTTTCACAAAGATTTGCAT 326
>seq21568
Length=652
Score = 89.7 bits (98), Expect = 3e-13
Identities = 166/240 (69%), Gaps = 4/240 (2%)
Strand=Plus/Plus
Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570
|||||| || ||||| | || || | ||||||||| ||||| || ||||| |||
Sbjct 299 AAAATCTGCATCCCACCACGCAGTCGAAGCACCAAATGCAGAGTTGATTCCTTTTGGATG 358
Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630
|||||||| | || || | | || |||| ||| || || ||||| |||| | ||||
Sbjct 359 TTGTAATCTGCTAGAGTTCTGCCATCTTCCAGTTGCTTGCCTGCAAAGATCAGCCTCTGC 418
Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC 33689
|| || | || | || |||||||| ||| || ||| | |||| ||| | ||||||
Sbjct 419 TGGTCAGGTGGGATTCCCTCTTTGTCTTGAATCTT-TGTCTTCACATTGTCGATGGTGTC 477
Query 33690 GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
| ||| || || | ||||| || || || || || || || || || ||||||||
Sbjct 478 GGAACTTTCTACTTCCAAAGTGATGGTCTTGCCAGTCAATGTCTTCACGAAAATCTGCAT 537
>seq281664
Length=792
Score = 84.2 bits (92), Expect = 1e-11
Identities = 136/193 (70%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617
||| || || ||||||||||| | || || | | | || |||| || ||||| |||||
Sbjct 129 CTCCTTCTGAATGTTGTAATCAGCAAGGGTCCTTCCATCTTCCAGCTGCTTTCCAGCAAA 188
Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677
||||| |||||||| ||| | || | ||||| ||||| ||||| || | |||||
Sbjct 189 GATCAACCGCTGCTGGTCTGGAGGAATTCCTTCCTTGTCCTGGATTTT-TGCCTTAACAT 247
Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736
||| | || || ||||| || | ||||| || || ||||| | || || |
Sbjct 248 TGTCGATTGTATCAGAACTCTCCACCTCCAAGGTGATGGTCTTCCCTGTCAGGGTCTTGA 307
Query 33737 CAAAGATCTGCAT 33749
|||||||||||||
Sbjct 308 CAAAGATCTGCAT 320
>seq126021
Length=250
Score = 82.4 bits (90), Expect = 5e-11
Identities = 159/231 (69%), Gaps = 8/231 (3%)
Strand=Plus/Minus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
||||| | | ||| | ||| | || |||||| ||| ||||| |||||||||||||
Sbjct 243 CCACCACGAAGACGGAGCACAAGGTGAAGAGTGGACTCCTTTTGAATGTTGTAATCGGCT 184
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
||||| || | || || | || || || ||||| ||||| | |||||||| | ||
Sbjct 183 AGTGTACGACCATCTTCGAGCTGCTTGCCTGCAAAGATCAACCTTTGCTGATCCGGGGGA 124
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATTC 33698
| |||||| ||||| ||| || | || |||| ||| | ||||| ||| |||
Sbjct 123 ATACCTTCCTTGTCTTGAATCTT-AGCTTTGACATTGTCGATTGTGTCAGAGCT---TTC 68
Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| || | || || || || || || | |||||| || || || |||||
Sbjct 67 AACTTCTAGTGTAATAGTCTTCCCCGTGAGCGTTTTGACGAAAATTTGCAT 17
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 327481696919040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |