Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq281664 150 4e-31 seq280556 134 3e-26 seq126021 134 3e-26 seq44495 129 1e-24 seq21568 125 2e-23 seq279770 120 7e-22 seq281289 102 2e-16 seq124980 91.5 3e-13 >seq281664 Length=792 Score = 150 bits (166), Expect = 4e-31 Identities = 157/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || || ||||| || || ||||| ||||| ||||| |||||||| Sbjct 317 CAGATCTTTGTCAAGACCCTGACAGGGAAGACCATCACCTTGGAGGTGGAGAGTTCTGAT 258 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| |||| || ||| ||| || || || || ||||||||| || ||| || Sbjct 257 ACAATCGACAATGTTAAGGCAAAAATCCAGGACAAGGAAGGAATTCCTCCAGACCAGCAG 198 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | ||||| || ||||||||| |||||||||||||||| | || ||||||||| | Sbjct 197 CGGTTGATCTTTGCTGGAAAGCAGCTGGAAGATGGAAGGACCCTTGCTGATTACAACATT 138 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| |||||||| ||||||||||| Sbjct 137 CAGAAGGAGTCTACCCTTCACCTTGT 112 Score = 132 bits (146), Expect = 1e-25 Identities = 158/213 (74%), Gaps = 1/213 (0%) Strand=Plus/Minus Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237 ||||| |||||| ||||| ||||| || ||||| ||||| || || ||| |||||| | Sbjct 768 TTTTGTCAAAACTCTCACCGGAAAGACCATCACCTTGGAGGTTGAGTCTTCAGACACAAT 709 Query 206238 CGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACT 206297 || || ||| |||||||| || || ||||| || || ||| || ||||| Sbjct 708 TGACAACGTGAAGGCCAAGATTCAGGACAAGGAAGGTATCCCCCCAGACCAACAGAGACT 649 Query 206298 TATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAA 206357 |||||||| ||||| |||||||| || || | ||| | || || |||||| ||||||| Sbjct 648 CATCTTCGCTGGAAAACAGTTGGAGGACGGCCGAACTCTTGCAGACTACAACATCCAGAA 589 Query 206358 AGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||||||||| || ||||| ||| | || || Sbjct 588 GGAGTCTACTCTCCATCTTGTCTTGCGTCTCCG 556 Score = 122 bits (134), Expect = 2e-22 Identities = 138/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || ||||| || ||||| | || || || || ||||| || |||| || ||| | Sbjct 524 ACTGGAAAGACCATCACCCTCGAGGTCGAGAGCTCTGATACCATCGACAACGTGAAGGCA 465 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 || ||||| || || ||||| || || ||| |||||| | ||||| ||||||||| Sbjct 464 AAAATTCAGGACAAGGAAGGCATCCCCCCAGACCAGCAAAGATTGATCTTTGCCGGAAAG 405 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| |||| |||||||||||| | || || |||||| | ||||| ||||| || |||||| Sbjct 404 CAGCTGGAGGATGGAAGGACTCTTGCTGACTACAACATTCAGAAGGAGTCAACCCTTCAC 345 Query 206374 CTTGT 206378 ||||| Sbjct 344 CTTGT 340 Score = 95.1 bits (104), Expect = 3e-14 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 ||||||||||| |||||||| ||||| | || || ||||| | ||||||||||||||| Sbjct 112 ACAAGGTGAAGGGTAGACTCCTTCTGAATGTTGTAATCAGCAAGGGTCCTTCCATCTTCC 171 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 ||||||||||| || ||||| | ||| || || Sbjct 172 AGCTGCTTTCCAGCAAAGATCAACCGCTGCTG 203 Score = 95.1 bits (104), Expect = 3e-14 Identities = 69/80 (86%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 ||||||||||| || ||||| ||||| | || |||||||| | |||||||||||| ||| Sbjct 340 ACAAGGTGAAGGGTTGACTCCTTCTGAATGTTGTAGTCAGCAAGAGTCCTTCCATCCTCC 399 Query 204824 AGCTGCTTTCCGGCGAAGAT 204843 |||||||||||||| ||||| Sbjct 400 AGCTGCTTTCCGGCAAAGAT 419 >seq280556 Length=777 Score = 134 bits (148), Expect = 3e-26 Identities = 150/198 (76%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGA-ATCAGTAAAGCA 206252 ||||||||||| |||||||||||||| || ||||| || || | || | | |||||| Sbjct 737 ACAGGAAAAACAATCACTTTGGAAGTTGAGAGTTCAGATACTATTGATAACGTTAAAGCT 678 Query 206253 AAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAA 206312 || ||| ||||| |||||||| || || ||| ||||| | || ||||| || || Sbjct 677 AA-GATCCAAGATAAAGAAGGGATCCCACCAGACCAACAAAGGTTAATTTTCGCTGGGAA 619 Query 206313 GCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCA 206372 ||| ||||||||||| |||||||| |||||||| ||| | || || || || || ||||| Sbjct 618 GCAATTGGAAGATGGCAGGACTTTAGCCGATTATAACATTCAAAAGGAATCGACACTTCA 559 Query 206373 CCTTGTTTTGAGACTTCG 206390 | | || || | ||||| Sbjct 558 CTTGGTGCTGCGTCTTCG 541 >seq126021 Length=250 Score = 134 bits (148), Expect = 3e-26 Identities = 149/196 (76%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 |||||||||||| || || || || || | ||||| ||||| ||||||||| |||| Sbjct 31 CAAAACGCTCACGGGGAAGACTATTACACTAGAAGTTGAAAGCTCTGACACAATCGACAA 90 Query 206244 AGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCT 206302 || ||||| ||||||||||| || ||||| ||| ||||| ||||| | |||| Sbjct 91 TGTCAAAGC-TAAGATTCAAGACAAGGAAGGTATTCCCCCGGATCAGCAAAGGTTGATCT 149 Query 206303 TCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGT 206362 | || || |||||| | |||||||| | || | |||||||||||| | || || |||| Sbjct 150 TTGCAGGCAAGCAGCTCGAAGATGGTCGTACACTAGCCGATTACAACATTCAAAAGGAGT 209 Query 206363 CTACTCTTCACCTTGT 206378 | |||||||||||||| Sbjct 210 CCACTCTTCACCTTGT 225 >seq44495 Length=1402 Score = 129 bits (142), Expect = 1e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || ||||| ||||| ||||| | || || ||| ||||| || |||| Sbjct 1359 AAGACCCTGACAGGTAAAACCATCACCCTCGAGGTTGAATCCTCTGATACCATCGATAAC 1300 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||| || || || || || ||| || ||| ||||||||||||||| Sbjct 1299 GTTAAGGCAAAGATCCAGGACAAGGAGGGTATTCCCCCAGACCAGCAAAGACTTATCTTC 1240 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| ||||| | || ||||| | || | |||||||| ||| ||||||| ||||| Sbjct 1239 GCCGGGAAGCAACTAGAGGATGGTCGTACCCTTGCCGATTATAACATCCAGAAGGAGTCG 1180 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||||||||||| ||| | ||||| Sbjct 1179 ACTCTTCACCTTGTGTTGCGTCTTCG 1154 Score = 125 bits (138), Expect = 2e-23 Identities = 141/186 (76%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGT-AAAGCA 206252 || ||||| || ||||| |||| ||||| || |||||||| |||| || ||||| Sbjct 894 ACCGGAAAGACCATCACCCTGGAGGTGGAGAGCTCTGACACGATCGATAATGTGAAAGCT 835 Query 206253 AAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAA 206312 ||| ||||| || || ||||| || ||||| || || || |||||||| || || Sbjct 834 AAA-ATTCAGGACAAGGAAGGCATCCCTCCGGATCAGCAGAGGCTGATCTTCGCTGGGAA 776 Query 206313 GCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCA 206372 |||| | || |||||||||||| | || ||||||||| | ||||| ||||| |||||||| Sbjct 775 GCAGCTTGAGGATGGAAGGACTCTCGCTGATTACAACATTCAGAAGGAGTCCACTCTTCA 716 Query 206373 CCTTGT 206378 ||| || Sbjct 715 CCTCGT 710 Score = 120 bits (132), Expect = 7e-22 Identities = 147/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| ||| | || || || || ||||| || || || || ||||| ||| Sbjct 1143 CAGATTTTCGTCAAGACGTTGACCGGCAAGACCATCACCTTAGAGGTTGAGAGTTCGGAC 1084 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| ||||| || || ||||| || ||| || Sbjct 1083 ACCATTGACAACGTCAAGGCTAAGATCCAAGACAAGGAGGGAATCCCACCAGACCAGCAG 1024 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || || |||||||| ||||||||| |||||||||| ||||||||||| || || ||| || Sbjct 1023 AGGCTGATCTTCGCTGGAAAGCAGCTGGAAGATGGTAGGACTTTGGCTGACTATAACATC 964 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 ||||| ||||| || || ||| Sbjct 963 CAGAAGGAGTCAACCCTGCAC 943 Score = 104 bits (114), Expect = 5e-17 Identities = 71/80 (89%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 204769 GTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 204828 ||| || || ||||| ||||||| |||||||||||||||||||| |||||||||||||| Sbjct 943 GTGCAGGGTTGACTCCTTCTGGATGTTATAGTCAGCCAAAGTCCTACCATCTTCCAGCTG 1002 Query 204829 CTTTCCGGCGAAGATAAGCC 204848 |||||| |||||||| |||| Sbjct 1003 CTTTCCAGCGAAGATCAGCC 1022 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||| | ||| |||||||||||||| ||||| ||||||| ||||| || || | || Sbjct 1154 CGAAGACGCAACACAAGGTGAAGAGTCGACTCCTTCTGGATGTTATAATCGGCAAGGGTA 1213 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 | ||||| || || ||||| |||||||||||||| | ||| || Sbjct 1214 CGACCATCCTCTAGTTGCTTCCCGGCGAAGATAAGTCTTTGCTG 1257 Score = 87.8 bits (96), Expect = 4e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 || ||||||||||| ||||| ||||| | || || ||||| | |||||||||||| || Sbjct 710 ACGAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGCGAGAGTCCTTCCATCCTCA 769 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 |||||||| || |||||||| |||| || ||| Sbjct 770 AGCTGCTTCCCAGCGAAGATCAGCCTCTGCTGA 802 >seq21568 Length=652 Score = 125 bits (138), Expect = 2e-23 Identities = 135/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || || |||||||||||||| |||||||| ||||| |||| || ||| | Sbjct 513 ACTGGCAAGACCATCACTTTGGAAGTAGAAAGTTCCGACACCATCGACAATGTGAAGACA 454 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||||||||| ||||| ||||| || ||| || || || ||||| || || ||| Sbjct 453 AAGATTCAAGACAAAGAGGGAATCCCACCTGACCAGCAGAGGCTGATCTTTGCAGGCAAG 394 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCA 206372 || |||||||||| || ||| | || ||||||||| |||| || || || ||||| || Sbjct 393 CAACTGGAAGATGGCAGAACTCTAGCAGATTACAACATCCAAAAGGAATCAACTCTGCA 335 Score = 98.7 bits (108), Expect = 2e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||||||||| || || || ||| || || || ||| | ||||| Sbjct 240 GTGAAGGCAAAGATTCAAGACAAGGAGGGGATTCCTCCAGATCAACAGAGATTGATCTTT 181 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || ||||| || ||||| ||||| |||||||||| |||||||| | ||||||||||| Sbjct 180 GCTGGAAAACAATTGGAGGATGGTCGGACTTTGGCTGATTACAATATTCAGAAAGAGTCC 121 Query 206365 ACTCTTCACCTTGT 206378 || || |||||||| Sbjct 120 ACCCTCCACCTTGT 107 >seq279770 Length=767 Score = 120 bits (132), Expect = 7e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| || ||||| ||||| | || |||||||| || |||||| | || Sbjct 197 AAAACCCTCACTGGCAAAACAATCACCCTCGAGGTGGAAAGCTCAGACACAATTGACAAT 256 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| |||||||||||| ||||| || ||| || ||| || || |||||||| Sbjct 257 GTAAAGGCAAAGATTCAAGATAAAGAGGGCATTCCACCCGACCAACAGAGGCTTATCTTT 316 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| | || || || | || | ||||||||||| ||||||| || ||| Sbjct 317 GCTGGTAAGCAACTTGAGGACGGCCGAACGCTTGCCGATTACAATATCCAGAAGGAATCT 376 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 || || || | || | |||||||| Sbjct 377 ACACTCCATTTGGTGCTTAGACTTCG 402 >seq281289 Length=787 Score = 102 bits (112), Expect = 2e-16 Identities = 136/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| || ||||| || || | || |||||||||||||| || | || Sbjct 341 AAAACTCTCACCGGCAAAACAATAACCCTTGAGGTGGAAAGTTCTGATACTATTGACAAT 400 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| || ||||| || ||||| ||||| || ||| ||||| ||||| || Sbjct 401 GTGAAGGCCAAAATTCAGGATAAAGAGGGAATCCCTCCAGACCAGCAAAGGCTTATTTTT 460 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || ||||||||| | || ||||| | || | |||||||| ||| | || ||||| || Sbjct 461 GCTGGAAAGCAGCTCGAGGATGGTCGAACCCTCGCCGATTATAACATACAAAAAGAATCA 520 Query 206365 ACTCTTCAC 206373 || |||||| Sbjct 521 ACCCTTCAC 529 >seq124980 Length=249 Score = 91.5 bits (100), Expect = 3e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| || || || ||||||||| ||||| ||| || | ||||| ||||| ||| Sbjct 17 AAGATCCAGGATAAGGAAGGAATTCCCCCGGATCAGCAACGATTGATCTTTGCCGGCAAG 76 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 || | || ||||| | ||| | ||||| |||||| |||||||||| || ||||||||| Sbjct 77 CAACTTGAGGATGGCCGAACTCTTGCCGACTACAACATCCAGAAAGAATCAACTCTTCAC 136 Query 206374 CTTGT 206378 || || Sbjct 137 CTCGT 141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177200769992152