Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_025460.1 Length=42600 Score E Sequences producing significant alignments: (Bits) Value seq178946 179 1e-40 seq224806 107 5e-19 >seq178946 Length=318 Score = 179 bits (198), Expect = 1e-40 Identities = 136/159 (86%), Gaps = 1/159 (1%) Strand=Plus/Minus Query 8400 AACGCTGAACCTTCTAATACGTTTGAAACAAAGATTAGACATTCACCTTCAATAACAATT 8459 |||||||| ||||||||||| || ||||| ||||||||||||||||||||||| |||||| Sbjct 318 AACGCTGAGCCTTCTAATACATTCGAAACCAAGATTAGACATTCACCTTCAATCACAATT 259 Query 8460 AACAATAAGAAATTTGCAAATCCTAGCATTACGGACGTAGTAGAAGCAATTAGAAATGGA 8519 ||| |||||||||||| || || || || | | |||||||||||||||||||| ||| Sbjct 258 AACGATAAGAAATTTGTGAACCCAAGTATCAGTCAAGTAGTAGAAGCAATTAGAAACGGA 199 Query 8520 AACTAAAAATTAATTAAAAGGACGGTATTTAATTATGAA 8558 |||||| || || ||||||||||||| | ||||||||| Sbjct 198 AACTAATAA-AAAATAAAAGGACGGTAATCAATTATGAA 161 >seq224806 Length=425 Score = 107 bits (118), Expect = 5e-19 Identities = 234/344 (68%), Gaps = 15/344 (4%) Strand=Plus/Minus Query 39309 CAAGACATGTATCAAGATACAGCATACGGTGTTAATGTAGGTAATAAAAAAGATTATGGC 39368 |||||| ||||||||||||| ||| || ||||||||| | |||||| || Sbjct 414 CAAGACTTGTATCAAGATACGCTATATGGACAACGTGTAGGTAACTATTCAGATTACGGT 355 Query 39369 TTATATTGGGTTAAATCACAGGGGTA---TGACATTGTTCTAGAAATACATTTAGACGCA 39425 ||||||||||||||| | | | | ||| | || ||||| | || ||||| || Sbjct 354 TTATATTGGGTTAAAAAGAACGTGAAACCTGATGTGATTGTAGAATTCCACTTAGATGCT 295 Query 39426 GCAGGAGAAAGCGCAAGTGGTGGGCATGTTATTATCTCAAGTCA---ATTCAATGCAGAT 39482 || | | |||||||| || ||||| ||| | ||| | || |||||| Sbjct 294 GCTAGTCCACAAGCAAGTGGCGGACATGTCATTGT---AAGCGACAGATATCCTGCAGAC 238 Query 39483 ACTATTGATAAAA--GTATACAAGATGT-TATTAAAAATAATTTAGGACAAATAAGAGGT 39539 ||| || ||| |||| | || | || || | | || || |||| ||||| Sbjct 237 GATATAGACAAAGCGGTAT-CTAGCGCTCTAGGTAAGACAGTT--GGCAAAATTAGAGGC 181 Query 39540 GTAACACCTCGTAACGATTTACTAAATGTTAACGTATCAGCAGAAATAAATATAAATTAT 39599 || |||||| | ||||||||| |||||| |||||| | | | || | ||| |||||||| Sbjct 180 GTGACACCTAGAAACGATTTATTAAATGCTAACGTTACTGGACAACTCAATTTAAATTAT 121 Query 39600 CGCTTATCTGAATTAGGTTTTATCACTAATAAAAATGATATGGA 39643 | ||| || ||||||||||| |||| |||||| |||||||| Sbjct 120 AGATTAATCGAGTTAGGTTTTATAACTAGTAAAAAGGATATGGA 77 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 135704925276128