Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19]
305,112 sequences; 176,727,258 total letters
Query= NC_026268.1
Length=139132
Score E
Sequences producing significant alignments: (Bits) Value
seq281289 100 3e-16
seq280556 86.0 6e-12
>seq281289
Length=787
Score = 100 bits (110), Expect = 3e-16
Identities = 148/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234
|||||| | ||||| ||||| | ||||| ||| | || || | || || |||
Sbjct 326 ATGCAAATCTTTGTGAAAACTCTCACCGGCAAAACAATAACCCTTGAGGTGGAAAGTTCT 385
Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294
|||||||| || | || || |||||| ||||||||||| || || || || |||
Sbjct 386 GATACTATTGACAATGTGAAGGCCAAAATTCAGGATAAAGAGGGAATCCCTCCAGACCAG 445
Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354
||||| || |||| | || || || ||||| |||| | ||| || |||||| ||
Sbjct 446 CAAAGGCTTATTTTTGCTGGAAAGCAGCTCGAGGATGGTCGAACCCTCGCCGATTATAAC 505
Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTG 25384
|| ||||||||||| ||| |||| || |||
Sbjct 506 ATACAAAAAGAATCAACCCTTCACTTGGTG 535
Score = 86.0 bits (94), Expect = 6e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234
|||||| | || || ||||| | || || ||| | ||||| | || || ||| |
Sbjct 554 ATGCAAATCTTCGTGAAAACCCTCACTGGTAAAACCATCACCTTAGAGGTGGAAAGCTCT 613
Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294
||||| ||||| | || || || || ||||||||||| || || || || |||
Sbjct 614 GATACCATCGATAATGTGAAGGCTAAGATCCAAGATAAAGAGGGAATCCCCCCTGACCAG 673
Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354
|| ||||| |||| || || |||||||| ||||||| | | | | || ||||||
Sbjct 674 CAGAGACTAATTTTCGCTGGTAAACAACTTGAAGATGGCCGCACTTTGGCGGACTACAAT 733
Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTG 25384
||||| || ||||| || | ||||| |||
Sbjct 734 ATTCAGAAGGAATCAACATTGCATTTGGTG 763
>seq280556
Length=777
Score = 86.0 bits (94), Expect = 6e-12
Identities = 140/199 (70%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGA-AGCCAA 25233
|||||| | ||||| || || ||||| ||||| | ||||| | ||||| || ||| |
Sbjct 533 ATGCAAATATTTGTGAAGACCTTAACAGGAAAGACCATCACATTAGAAGTTGAGAGCTCA 474
Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293
|| |||||||| | || || ||||| || || |||||||| || || || ||
Sbjct 473 -GACACTATCGACAATGTGAAGGCTAAAATCCAGGACAAGGAGGGTATTCCTCCTGACCA 415
Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353
||||||||| |||| || || || ||| | || |||| | | | || |||||
Sbjct 414 GCAAAGACTGATTTTCGCTGGGAAGCAATTGGAGGATGGACGTACATTGGCTGACTACAA 355
Query 25354 TATTCAAAAAGAATCCACC 25372
|||||||| |||||||||
Sbjct 354 CATTCAAAAGGAATCCACC 336
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 443396854467840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |