Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq299969 125 1e-22 seq230622 120 4e-21 seq273947 93.3 6e-13 seq218924 87.8 3e-11 >seq299969 Length=1347 Score = 125 bits (138), Expect = 1e-22 Identities = 208/298 (70%), Gaps = 2/298 (1%) Strand=Plus/Minus Query 1455734 AACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAA 1455793 ||||| | ||||| | ||||||| || | || | | || ||||| |||||| | Sbjct 309 AACCCCGATCGCTTCTGCATGTTCCCGATTCAGTATCCTCAAATCTGGGAGATGTACAAG 250 Query 1455794 AAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCA 1455853 |||| |||| |||||||| ||||| |||||||| ||||| ||| ||| ||| Sbjct 249 AAAG-CCGAAGCCTCCTTCTGGACTGCCGAGGAAGTCGATCTCTCACAGGACCTTCGCCA 191 Query 1455854 CTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCG 1455913 |||| || | | ||||||| || ||||||| ||||| || ||||| || || Sbjct 190 TTGGGAATCCTTAACTTCCGACGAGAAACACTTCATCACTCACGTTCTTGCCTTCTT-CG 132 Query 1455914 CCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAAT 1455973 | || ||||||||||| ||||| || ||||| ||||| |||||||| || ||| Sbjct 131 CTGCTTCTGATGGCATCGTTTTGGAGAATCTCGCCGGACGCTTCATGAAAGAAGTTCAAG 72 Query 1455974 TGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGA 1456031 || | || || | || || || ||||| || || ||||| || ||||||||||| Sbjct 71 TGGCTGAAGCCAGAGCCTTCTATGGATTCCAAATTGCGATCGAGAATATCCACTCTGA 14 >seq230622 Length=445 Score = 120 bits (132), Expect = 4e-21 Identities = 207/298 (69%), Gaps = 2/298 (1%) Strand=Plus/Minus Query 1455734 AACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAA 1455793 ||||| | ||||| | |||| || || | |||| | || ||||| |||||| || Sbjct 309 AACCCTGATCGCTTCTGCATGTTTCCAATTCAGTACCCTCAAATTTGGGAGATGTAC-AA 251 Query 1455794 AAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCA 1455853 |||||||| || ||||| |||||||||||||| ||||| ||| || ||| Sbjct 250 GAAGGCCGAAGCTTCCTTCTGGACCGCCGAGGAAGTCGATCTCTCACAGGATCTTCGCCA 191 Query 1455854 CTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCG 1455913 |||| ||| | | ||||||| || ||||||| ||||| || ||||| ||| | Sbjct 190 TTGGGAGTCCTTAACTCCCGACGAGAAGCACTTCATCACTCACGTGCTTGCCTTCTTT-G 132 Query 1455914 CCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAAT 1455973 | || |||||||| || ||||| || || || || || |||||||| || ||| Sbjct 131 CTGCATCTGATGGCATTGTTTTGGAGAATCTTGCTGGACGTTTCATGAAAGAAGTTCAAG 72 Query 1455974 TGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGA 1456031 | | || || | ||||| || || || |||||||| ||||| ||||||||||| Sbjct 71 TCTCTGAAGCCAGAGCCTTTTATGGATTTCAAATCGCCATTGAAAATATCCACTCTGA 14 >seq273947 Length=700 Score = 93.3 bits (102), Expect = 6e-13 Identities = 176/256 (69%), Gaps = 6/256 (2%) Strand=Plus/Plus Query 1456021 ATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAG 1456080 ||||||||||| | ||| || || |||| || || |||| || | ||||||| Sbjct 2 ATCCACTCTGAGATGTACAGTCTTCTTCTCGAAACTTATATCAAAGATTCAAACGAGAAG 61 Query 1456081 GACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCG 1456140 | | ||||| || ||||| ||||| || | || | ||| ||||| || |||||| Sbjct 62 AGTCGATTATTTCGTGCAATCGAGACGGTCCCCTGTGTCAAGAAGAAGGCTGATTGGGCG 121 Query 1456141 ATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGC-C 1456199 | ||||||||| || || | || ||| ||||||||||| | | | ||||| Sbjct 122 TTAAAGTGGATCGAC-AGCACGGAATCG----TTTGCCGAGCGTATTTTGGCATTTGCTT 176 Query 1456200 GCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCG 1456259 | || || || ||||| ||||| || || |||||| |||| || ||| | || || || | Sbjct 177 GTGTTGAAGGAATCTTCTTCTCAGGTAGCTTCTGCTCCATTTTCTGGTTGAAAAAACGTG 236 Query 1456260 GCCTCATGCCCGGTCT 1456275 | | ||||| || || Sbjct 237 GATTAATGCCTGGACT 252 >seq218924 Length=406 Score = 87.8 bits (96), Expect = 3e-11 Identities = 173/253 (68%), Gaps = 6/253 (2%) Strand=Plus/Minus Query 1456021 ATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAG 1456080 ||||||||||| | ||| || || | || ||||| ||||||| || | |||||| Sbjct 405 ATCCACTCTGAGATGTACAGTCTTCTCCTTGAAACCTATATCAAGGATTCGATTGAGAAG 346 Query 1456081 GACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCG 1456140 | | | || || || || || || || || | || | ||||||||| || |||||| Sbjct 345 AATCGGTTATTCCGTGCTATTGAAACTGTCCCCTGCGTCAAGAAAAAGGCTGATTGGGCG 286 Query 1456141 ATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGC-C 1456199 |||||||||| || || | | ||| || || |||||| | | | || || Sbjct 285 TTGAAGTGGATTGAC-AGTACAGAATCG----TTCGCTGAGCGGATTTTGGCGTTCGCTT 231 Query 1456200 GCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCG 1456259 | || ||||| || || ||||| || ||||||||| | || || ||| | || || || | Sbjct 230 GTGTTGAGGGAATTTTCTTCTCAGGTAGTTTCTGCTCTATTTTCTGGTTAAAAAAACGTG 171 Query 1456260 GCCTCATGCCCGG 1456272 | || ||||| || Sbjct 170 GGCTAATGCCTGG 158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7148382586804144