Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq281664 122 8e-23 seq44495 113 4e-20 seq21568 111 1e-19 seq281289 107 2e-18 seq279770 102 7e-17 seq280556 98.7 9e-16 seq48980 96.9 3e-15 seq122851 91.5 1e-13 seq126021 86.0 6e-12 >seq281664 Length=792 Score = 122 bits (134), Expect = 8e-23 Identities = 146/197 (74%), Gaps = 6/197 (3%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| |||||||||||||| || | ||| | | || ||||||||||| || ||||| Sbjct 129 CTCCTTCTGAATGTTGTAATCAGCAAGGGTCCTTCCATCTTCCAGCTGCTTTCCAGCAAA 188 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||||||||||||||| | ||||| | ||||||||| ||| ||| ||| | | | Sbjct 189 GATCAACCGCTGCTGGTCTGGAGGAATTCCTTCCTTGTCCTGGATTTTTGCCTTAACATT 248 Query 35665 TGCCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTT 35721 | | || || ||| |||||||||| ||||| || || || |||| || || Sbjct 249 GTCGATTGTATCAGAACTC---TCCACCTCCAAGGTGATGGTCTTCCCTGTCAGGGTCTT 305 Query 35722 CACAAATATCTGCATTC 35738 ||||| |||||||||| Sbjct 306 GACAAAGATCTGCATTC 322 Score = 95.1 bits (104), Expect = 1e-14 Identities = 143/197 (73%), Gaps = 10/197 (5%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| ||||||||||| || || | || | | || ||||||||||| || ||||| Sbjct 357 CTCCTTCTGAATGTTGTAGTCAGCAAGAGTCCTTCCATCCTCCAGCTGCTTTCCGGCAAA 416 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTG-CTTCAGAG 35663 ||||| | |||||||| | || | || ||||||||| ||| ||||| ||||| | Sbjct 417 GATCAATCTTTGCTGGTCTGGGGGGATGCCTTCCTTGTCC-TGAATTTTTGCCTTCA-CG 474 Query 35664 TTG-CCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTT 35719 ||| | | || || |||| || ||||| | ||||| || || || |||||||| Sbjct 475 TTGTCGATGGTATCAGAGCTC---TCGACCTCGAGGGTGATGGTCTTTCCAGTCAAAGTC 531 Query 35720 TTCACAAATATCTGCAT 35736 || || || |||||||| Sbjct 532 TTAACGAAGATCTGCAT 548 >seq44495 Length=1402 Score = 113 bits (124), Expect = 4e-20 Identities = 145/196 (74%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| |||||||||||||| || | || | | || || |||||||| || || || Sbjct 727 CTCCTTCTGAATGTTGTAATCAGCGAGAGTCCTTCCATCCTCAAGCTGCTTCCCAGCGAA 786 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAG 35663 |||| || |||||| |||| ||| | || ||||||||| ||| ||| || |||| | Sbjct 787 GATCAGCCTCTGCTGATCCGGAGGGATGCCTTCCTTGTCC-TGAATTTTAGCTTTCACAT 845 Query 35664 TTGCCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTT 35720 | | | |||||| |||| |||||||||| ||||| || || || ||||| || | Sbjct 846 TATCGATCGTGTCAGAGCTC---TCCACCTCCAGGGTGATGGTCTTTCCGGTCAAGGTCT 902 Query 35721 TCACAAATATCTGCAT 35736 |||| || |||||||| Sbjct 903 TCACGAAGATCTGCAT 918 Score = 82.4 bits (90), Expect = 7e-11 Identities = 149/214 (70%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 |||||| || | || |||||| || ||||| || || ||||| || | | || || Sbjct 937 CACCAAGTGCAGGGTTGACTCCTTCTGGATGTTATAGTCAGCCAAAGTCCTACCATCTTC 996 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 ||||||||| || || || |||| || ||||||||| | || | | ||||||||| Sbjct 997 CAGCTGCTTTCCAGCGAAGATCAGCCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTG 1056 Query 35647 GATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGA---TTCCACCTCCACCGTGATCG 35702 |||||| ||| | |||| | | ||||| ||| || ||||| | ||||| | Sbjct 1057 GATCTTAGCCTTGA-CGTTGTCAATGGTGTC---CGAACTCTCAACCTCTAAGGTGATGG 1112 Query 35703 TTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | || || ||||| || || || || |||||||| Sbjct 1113 TCTTGCCGGTCAACGTCTTGACGAAAATCTGCAT 1146 >seq21568 Length=652 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | ||||||||| | || |||||||| ||||||||||| || Sbjct 311 CCACCACGCAGTCGAAGCACCAAATGCAGAGTTGATTCCTTTTGGATGTTGTAATCTGCT 370 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | |||| | || ||||| ||||| || ||||| |||| || ||||||||| | || Sbjct 371 AGAGTTCTGCCATCTTCCAGTTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGTGGG 430 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||| ||||| |||||| ||||| | | | | |||||| ||| || Sbjct 431 ATTCCCTCTTTGTCTTGAATCTTTGTCTTCACATTGTCGATGGTGTCGGAACTTTCTACT 490 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 |||| ||||| || || || ||||| || ||||| || |||||||||| Sbjct 491 TCCAAAGTGATGGTCTTGCCAGTCAATGTCTTCACGAAAATCTGCATTC 539 >seq281289 Length=787 Score = 107 bits (118), Expect = 2e-18 Identities = 167/235 (71%), Gaps = 3/235 (1%) Strand=Plus/Minus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 ||||||||||||| | | |||||| || | || || ||||| ||||| ||||||| Sbjct 554 TTCCACCACGTAAACGGAGCACCAAGTGAAGGGTTGATTCTTTTTGTATGTTATAATCGG 495 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 | | |||||| | || || |||||||| || ||||| || | || |||||||| | || Sbjct 494 CGAGGGTTCGACCATCCTCGAGCTGCTTTCCAGCAAAAATAAGCCTTTGCTGGTCTGGAG 435 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTG-CTTCAGAGTTGCCACCGTGTCGCTCGATTCC 35686 | | | ||| || ||| ||| ||| | ||||| | | | | || || |||| Sbjct 434 GGATTCCCTCTTTATCC-TGAATTTTGGCCTTCACATTGTCAATAGTATCAGAACTTTCC 376 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTGT 35741 ||||| | || || ||||| || || | |||||||||||| || |||| ||||| Sbjct 375 ACCTCAAGGGTTATTGTTTTGCCGGTGAGAGTTTTCACAAAGATTTGCA-TCTGT 322 >seq279770 Length=767 Score = 102 bits (112), Expect = 7e-17 Identities = 165/235 (70%), Gaps = 7/235 (3%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || | || | ||||||||| | ||| ||||| || || ||||||||||| Sbjct 408 CCACCGCGAAGTCTAAGCACCAAATGGAGTGTAGATTCCTTCTGGATATTGTAATCGGCA 349 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||||| |||| || || |||||||| ||||| || | || ||| ||||| | ||| Sbjct 348 AGCGTTCGGCCGTCCTCAAGTTGCTTACCAGCAAAGATAAGCCTCTGTTGGTCGGGTGGA 289 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTC---GCTCGATTCC 35686 | || ||| || || |||||| ||| | | | | | ||||| ||| |||| Sbjct 288 ATGCCCTCTTTATCTTGAATCTTTGCCTTTACATTGTCAATTGTGTCTGAGCT---TTCC 232 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTGT 35741 ||||| | ||||| ||||| || || | ||||| || || || |||| ||||| Sbjct 231 ACCTCGAGGGTGATTGTTTTGCCAGTGAGGGTTTTTACGAAGATTTGCA-TCTGT 178 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 |||||||| | ||| ||||| ||||| ||||| ||||| | ||||| |||| || Sbjct 618 ACCAAATGCAGGGTAGATTCCTTCTGAATATTGTAGTCGGCGAGAGTTCGACCGTCCTCA 559 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 ||||||||||| ||||| |||| | ||| || || | || | | ||||||||| | Sbjct 558 AGCTGCTTACCAGCAAAAATCAGTCTCTGTTGATCAGGTGGGATACCCTCCTTGTCTTGG 499 Query 35648 ATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTA 35707 || || ||| | | | | | || || ||||||||| | || || ||||| Sbjct 498 ATTTTAGCCTTGACATTGTCAATTGTATCAGAACTTTCCACCTCAAGAGTAATGGTTTTG 439 Query 35708 CCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || | || ||||||||||| ||||| Sbjct 438 CCAGTAAGGGTCTTCACAAATATTTGCAT 410 >seq280556 Length=777 Score = 98.7 bits (108), Expect = 9e-16 Identities = 139/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||||||||||||||| || ||||| || || | || |||| ||||| || || || Sbjct 343 TCCTTTTGAATGTTGTAGTCAGCCAATGTACGTCCATCCTCCAATTGCTTCCCAGCGAAA 402 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| | |||||||| | ||||| | |||||||||| ||| || ||||| | | Sbjct 403 ATCAGTCTTTGCTGGTCAGGAGGAATACCCTCCTTGTCCTGGATTTTAGCCTTCACATTG 462 Query 35666 GCCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTC 35722 | | ||||| |||| || || || | ||||| || || || || || || ||| Sbjct 463 TCGATAGTGTCTGAGCTC---TCAACTTCTAATGTGATGGTCTTTCCTGTTAAGGTCTTC 519 Query 35723 ACAAATATCTGCAT 35736 |||||||| ||||| Sbjct 520 ACAAATATTTGCAT 533 >seq48980 Length=3483 Score = 96.9 bits (106), Expect = 3e-15 Identities = 167/240 (70%), Gaps = 7/240 (3%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | ||| || || | ||| | ||| |||||| || |||||||| ||||| Sbjct 1050 CCACCACGGAGCCTTAAGACAAGATGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCA 991 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||||| | || |||| ||||||||| || || || | ||||||||||||| || Sbjct 990 AGTGTTCGACCATCCTCCATCTGCTTACCGGCGAAAATGAGACGCTGCTGGTCCGGCGGT 931 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTC---GCTCGATTCC 35686 | | |||||| ||| |||||| ||| | | | | | || || ||| || Sbjct 930 ATTCCCTCCTTATCCTGAATCTTTGCCTTGACATTATCGATGGTATCAGAACTC---TCG 874 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTGTGCGCA 35746 ||||| | || || || || || || | |||||||| || |||||||| ||| |||| Sbjct 873 ACCTCGAGAGTTATGGTCTTCCCGGTAAGCGTTTTCACGAAGATCTGCATATTGT-CGCA 815 >seq122851 Length=247 Score = 91.5 bits (100), Expect = 1e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 ||||||| || || | | ||||||||| ||||| ||||||||||| |||||||| | Sbjct 120 TTCCACCGCGCAATCGAAGCACCAAATGCAACGTCGATTCCTTTTGAATATTGTAATCTG 61 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTC 35622 ||| || | |||| || || |||||||| ||||| ||||||| ||| ||||| Sbjct 60 CCAGAGTCCTACCGTCTTCAAGTTGCTTACCAGCAAAAATCAACCTCTGTTGGTC 6 >seq126021 Length=250 Score = 86.0 bits (94), Expect = 6e-12 Identities = 138/197 (70%), Gaps = 6/197 (3%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||||||||||||||||||||| | || || | || || |||||||| || ||||| Sbjct 208 CTCCTTTTGAATGTTGTAATCGGCTAGTGTACGACCATCTTCGAGCTGCTTGCCTGCAAA 149 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||||| ||||| |||| |||| | |||||||| ||||| || | | | Sbjct 148 GATCAACCTTTGCTGATCCGGGGGAATACCTTCCTTGTCTTGAATCTTAGCTTTGACATT 89 Query 35665 TGCCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTT 35721 | | ||||| ||| ||| || || | || || || || ||||| | ||||| Sbjct 88 GTCGATTGTGTCAGAGCT---TTCAACTTCTAGTGTAATAGTCTTCCCCGTGAGCGTTTT 32 Query 35722 CACAAATATCTGCATTC 35738 || || || ||||||| Sbjct 31 GACGAAAATTTGCATTC 15 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449074318288960