Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq273947 183 4e-41 seq220814 107 3e-18 seq218924 100 4e-16 >seq273947 Length=700 Score = 183 bits (202), Expect = 4e-41 Identities = 407/604 (67%), Gaps = 10/604 (2%) Strand=Plus/Minus Query 39326 TTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 39385 ||||| ||||| ||||| | ||| || || ||||| || || |||| |||||| || | Sbjct 600 TTTTGATATTCCCCAACTCTTTTTTCAAAGAAATTGGTCTTCCCTTGCAATGAAATCAAT 541 Query 39386 TCCATGAAATCAAACGGATTAGTTG--CATTATAtttttttttAAATCCTAATTCTGAAA 39443 ||||| ||||||| ||||| ||| ||||||| |||| | | ||||| || || Sbjct 540 TCCATCCAATCAAATGGATT--TTGAACATTATAGATTTTGCCATACCCTAAAGCTCCAA 483 Query 39444 TCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGA 39503 ||||||||| || |||||||| |||||| |||||| || | ||||||||| | | Sbjct 482 CCAATCTATCGGCCACAAATTCAATGTATTGGCTCATCAAATCGCCATTCATTCCAACTA 423 Query 39504 GTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTA 39563 | ||| || | || || | || || | || || |||||||| || || | | Sbjct 422 GAGCAACAGGCAAGGCATCACACACGAATTCCCTCTCTATATCTACGGCTTCGGTAACAA 363 Query 39564 TCGATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGA 39623 || | ||| | |||||| || | | || | | ||| || || || | Sbjct 362 TCTCATTCACTCGATTCTCACTCAGTTTCTTCCTCAACAATGAATACAACAAACAAGCAA 303 Query 39624 AGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCA 39683 | || ||||| || ||||| |||| ||| || || || || |||||||||||||||| Sbjct 302 AATCGCAATGAAGACCCTCGTCTCGTGAAATCAACTCATTTGAGAATGTGAGTCCAGGCA 243 Query 39684 TTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAAGAAGATGCCT 39742 ||| ||||| ||||| | ||| || |||| |||| ||| | || || |||||||| ||| Sbjct 242 TTAATCCACGTTTTTTCAACCAGAAAATGG-AGCAGAAGCTACCTGAGAAGAAGATTCCT 184 Query 39743 TCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGT--ATCCACT 39800 || || |||||||| ||| | ||| | || | | | ||| ||||||| Sbjct 183 TCAACACAAGCAAATGC--CAAAATACGCTCGGCAAACGATTCCGTGCTGTCGATCCACT 126 Query 39801 TCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAT 39860 | ||||||||||| |||||||| ||||| || | || || || ||| ||| | Sbjct 125 TTAACGCCCAATCAGCCTTCTTCTTGACACAGGGGACCGTCTCGATTGCACGAAATAATC 66 Query 39861 AATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAAT 39920 | || || | |||||| | ||| || || | | ||||| ||||| || || | Sbjct 65 GACTCTTCTCGTTTGAATCTTTGATATAAGTTTCGAGAAGAAGACTGTACATCTCAGAGT 6 Query 39921 GGAT 39924 |||| Sbjct 5 GGAT 2 >seq220814 Length=412 Score = 107 bits (118), Expect = 3e-18 Identities = 130/175 (74%), Gaps = 4/175 (2%) Strand=Plus/Minus Query 39326 TTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 39385 ||||| ||||||||||| | |||||| || |||||||| || || | |||||| || Sbjct 221 TTTTGATATTCACCAACTCTTTTCTCAAAGAAATTAGTCTTCCCCTGCAATGAAATCAAC 162 Query 39386 TCCATGAAATCAAACGGATTAGTTGCA--TTATAtttttttttAAATCCTAATTCTGAAA 39443 ||||| ||||||| ||||| ||| | || || |||| | | | ||||| || || Sbjct 161 TCCATCCAATCAAATGGATT--TTGAACGTTGTAGATTTTCTCATACCCTAAGGCTCCAA 104 Query 39444 TCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCC 39498 ||| ||||||| ||||||||||||||| |||||| || | ||||||||| Sbjct 103 CCAACCTATCTGTCACAAATTCTATGTATTGGCTCATCAAATCCCCATTCATTCC 49 >seq218924 Length=406 Score = 100 bits (110), Expect = 4e-16 Identities = 217/316 (69%), Gaps = 8/316 (3%) Strand=Plus/Plus Query 39539 TCGATGTCTACGGCCTCTGTTATTATCGATGTTACTACCTCATCACTCGGTGGATGCAAT 39598 || || ||||| |||||||||| ||| | ||| || |||||| || | | | Sbjct 20 TCTATATCTACTGCCTCTGTTACAATCTCCTTCACTCGATCCTCACTCAGTTTCTTCC-T 78 Query 39599 AAATGTTTAA-ACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAA 39657 ||| | || ||| || || || || |||||||| || || |||||||| ||| || Sbjct 79 CAATAATGAATACAACAAACAAGCAAAATCACAATGAAGCCCTTCATCTCTTGAAATCAA 138 Query 39658 TTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGC 39717 || || || || || | |||||||||||| ||||| ||||| | ||| || || | ||| Sbjct 139 CTCATTTGAGAACGTTAATCCAGGCATTAGCCCACGTTTTTTTAACCAGAAAATAG-AGC 197 Query 39718 A-AAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGT 39776 | ||| || || ||||| || || || || || || || | || | ||| || Sbjct 198 AGAAACTACCTGAGAAGAAAATTCCCTCAACACAAGCGAACGCCAAAATCCGCTCAGCG- 256 Query 39777 AAC--TTGTATCATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGG 39834 ||| || | | | | | ||||||||| ||||||||||| || ||||| || || || Sbjct 257 AACGATTCTGT-ACTGTCAATCCACTTCAACGCCCAATCAGCCTTTTTCTTGACGCAGGG 315 Query 39835 CATTGTTTCTATAGCA 39850 | ||||| |||||| Sbjct 316 GACAGTTTCAATAGCA 331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 684288998527680