Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq273947 183 2e-41 seq218924 138 9e-28 seq230622 107 2e-18 seq299969 89.7 4e-13 >seq273947 Length=700 Score = 183 bits (202), Expect = 2e-41 Identities = 409/605 (68%), Gaps = 13/605 (2%) Strand=Plus/Plus Query 43972 TATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAA 44031 ||| || || || |||||||||||||| | || || || ||||||||| ||||||| Sbjct 1 TATCCACTCTGAGATGTACAGTCTTCTTCTCGAAACTTATATCAAAGATTCAAACGAGAA 60 Query 44032 GCATCGATTGTTTAATGCGATAGAAACAGTACC-TGCGATTAAACATAAAGCAGACTGGG 44090 | |||||| ||| ||| || || || || || || | | || | || || || |||| Sbjct 61 GAGTCGATTATTTCGTGCAATCGAGACGGTCCCCTGTG-TCAAGAAGAAGGCTGATTGGG 119 Query 44091 CCCTTAAATGGATAAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTG 44150 | | || ||||| | | || || |||| || || || | || ||||| || Sbjct 120 CGTTAAAGTGGATCGACAGCACGGAATCGTTTGCCGAGCGTATTTTGGCATTTGCTTGTG 179 Query 44151 TGGAAGGCATTTTCTTTTCAGG-ATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGT 44209 | ||||| || ||||| ||||| | | | ||| |||| || ||||| || ||||| || Sbjct 180 TTGAAGGAATCTTCTTCTCAGGTAGCTTCTGCT-CCATTTTCTGGTTGAAAAAACGTGGA 238 Query 44210 TTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGC 44269 || |||||||| | || || ||||||||||| || || || || || | |||||| Sbjct 239 TTAATGCCTGGACTCACATTCTCAAATGAGTTGATTTCACGAGACGAGGGTCTTCATTGC 298 Query 44270 GATTTTGCTTGCTTGTTACTTGGATATCTAGGAGACGATAAGCCTTCATG-TAAGACAAT 44328 ||||||||||| ||| ||| || | | || || | || || || | | Sbjct 299 GATTTTGCTTGTTTG----TTGTATTCATTGTTGAGGAAGAAACTGAGTGAGAATCGAGT 354 Query 44329 TACAGATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATTACC 44388 | || |||||| || || ||| | ||||| ||||| || || || || Sbjct 355 GAATGAGATTGTTACCGAAGCCGTAGATATAGAGAGGGAATTCGTGTGTGATGCCTTGCC 414 Query 44389 TGTAAATTTAATAGGAATGAATGAACTTTTGATGAACCAATATATTGAATACATTGCAGA 44448 ||| | || | |||||||||| |||||||| |||||| ||||||| | || || Sbjct 415 TGTTGCTCTAGTTGGAATGAATGGCGATTTGATGAGCCAATACATTGAATTTGTGGCCGA 474 Query 44449 TCGTTTACTTTTGGAAC--TGGGTTGCGATAAACACTATATTGTACAAAACCCGTTTGAT 44506 | | || ||||| | | || | | ||| ||||| ||| ||||| || |||||| Sbjct 475 TAGATT--GGTTGGAGCTTTAGGGTATGGCAAAATCTATAATGTTCAAAATCCATTTGAT 532 Query 44507 TTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAA 44566 | |||||| ||||| ||| |||| || || || || ||||||||| | ||||| ||| Sbjct 533 TGGATGGAATTGATTTCATTGCAAGGGAAGACCAATTTCTTTGAAAAAAGAGTTGGGGAA 592 Query 44567 TATCA 44571 ||||| Sbjct 593 TATCA 597 >seq218924 Length=406 Score = 138 bits (152), Expect = 9e-28 Identities = 225/318 (71%), Gaps = 6/318 (2%) Strand=Plus/Minus Query 43972 TATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAA 44031 ||| || || || |||||||||||||| | || || || ||||| ||| | ||||| Sbjct 406 TATCCACTCTGAGATGTACAGTCTTCTCCTTGAAACCTATATCAAGGATTCGATTGAGAA 347 Query 44032 GCATCGATTGTTTAATGCGATAGAAACAGTACC-TGCGATTAAACATAAAGCAGACTGGG 44090 | |||| || || ||| || ||||| || || |||| | || | || || || |||| Sbjct 346 GAATCGGTTATTCCGTGCTATTGAAACTGTCCCCTGCG-TCAAGAAAAAGGCTGATTGGG 288 Query 44091 CCCTTAAATGGATAAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTG 44150 | | || ||||| | | || || || | || || || | ||||| || || Sbjct 287 CGTTGAAGTGGATTGACAGTACAGAATCGTTCGCTGAGCGGATTTTGGCGTTCGCTTGTG 228 Query 44151 TGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTT--GGTTAAAGAAACGAGG 44208 | || || |||||||| ||||| | |||| | || |||||| ||||||| ||||| || Sbjct 227 TTGAGGGAATTTTCTTCTCAGG-TAGTTT-CTGCTCTATTTTCTGGTTAAAAAAACGTGG 170 Query 44209 TTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTG 44268 | |||||||| || ||||| ||||||||||| || | |||||||| | ||||| Sbjct 169 GCTAATGCCTGGATTAACGTTCTCAAATGAGTTGATTTCAAGAGATGAAGGGCTTCATTG 110 Query 44269 CGATTTTGCTTGCTTGTT 44286 ||||||||||| ||||| Sbjct 109 TGATTTTGCTTGTTTGTT 92 >seq230622 Length=445 Score = 107 bits (118), Expect = 2e-18 Identities = 200/291 (69%), Gaps = 2/291 (1%) Strand=Plus/Minus Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766 ||||||||||||| || | | | || ||| | |||||||| || || | || || || | Sbjct 290 TGTTTCCAATTCAGTACCCTCAAATTTGGGAGATGTACAAGAAGGCCGAAGCTTCCTTCT 231 Query 43767 GGACAGCAGAAGAAGTTGATTTGACTAAAGA-CTTAGCACATTGGATTGCATTAAAACCA 43825 |||| || || ||||| ||| | | | || ||| || |||||| | |||| || Sbjct 230 GGACCGCCGAGGAAGTCGATCTCTCACAGGATCTTCGC-CATTGGGAGTCCTTAACTCCC 172 Query 43826 CAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTC 43885 | || || || || || || || | || || |||||||| || || || || Sbjct 171 GACGAGAAGCACTTCATCACTCACGTGCTTGCCTTCTTTGCTGCATCTGATGGCATTGTT 112 Query 43886 AATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTT 43945 || ||| | | | | || || | ||||||||||| | | ||||| || ||| Sbjct 111 TTGGAGAATCTTGCTGGACGTTTCATGAAAGAAGTTCAAGTCTCTGAAGCCAGAGCCTTT 52 Query 43946 TATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTT 43996 ||||| |||||||| ||||| |||||||| || || || |||||||||||| Sbjct 51 TATGGATTTCAAATCGCCATTGAAAATATCCACTCTGAGATGTACAGTCTT 1 >seq299969 Length=1347 Score = 89.7 bits (98), Expect = 4e-13 Identities = 196/291 (67%), Gaps = 2/291 (1%) Strand=Plus/Minus Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766 |||| || ||||| |||| | | || ||| | |||||||| ||||| | || || || | Sbjct 290 TGTTCCCGATTCAGTATCCTCAAATCTGGGAGATGTACAAGAAAGCCGAAGCCTCCTTCT 231 Query 43767 GGACAGCAGAAGAAGTTGATTTGACTAAAGAC-TTAGCACATTGGATTGCATTAAAACCA 43825 |||| || || ||||| ||| | | | ||| || || |||||| | |||| | Sbjct 230 GGACTGCCGAGGAAGTCGATCTCTCACAGGACCTTCGC-CATTGGGAATCCTTAACTTCC 172 Query 43826 CAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTC 43885 | || ||||| || || || ||| | || || || ||||| || || || || Sbjct 171 GACGAGAAACACTTCATCACTCACGTTCTTGCCTTCTTCGCTGCTTCTGATGGCATCGTT 112 Query 43886 AATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTT 43945 || ||| | | | || || | ||||||||||| | | ||||| || || Sbjct 111 TTGGAGAATCTCGCCGGACGCTTCATGAAAGAAGTTCAAGTGGCTGAAGCCAGAGCCTTC 52 Query 43946 TATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTT 43996 ||||| || |||||||| || || ||||| || || || |||||||||||| Sbjct 51 TATGGATTCCAAATTGCGATCGAGAATATCCACTCTGAGATGTACAGTCTT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395978038997560