Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19]
305,112 sequences; 176,727,258 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq42289 134 2e-26
seq218924 114 2e-20
seq273947 105 8e-18
seq44487 104 3e-17
seq108436 86.0 8e-12
>seq42289
Length=1066
Score = 134 bits (148), Expect = 2e-26
Identities = 198/278 (71%), Gaps = 2/278 (1%)
Strand=Plus/Minus
Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598
||| ||||||||||| || | || ||||| || ||||| ||||||||||||||| |
Sbjct 1039 AAACCCATCCATCTCAGTCAATAGCTGATTGATAGTTTGCTCTCTCTCATCATTTCCACC 980
Query 11599 CATACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACA 11658
| ||| || | | || | ||||| |||||||||||||||||||| ||||| ||
Sbjct 979 TCCAAGACCTGCCCCTCTCTGTCTCCCCACGGCATCAATCTCATCAATGAACACAATGCA 920
Query 11659 TGGTTGATTTTCGCG-GGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAA 11717
|| | ||| | ||| | ||||| | || || || ||| |||||||||||||
Sbjct 919 AGGA-GCTTTGGACTTGGCTTTGTCAAACAAGTCCCGTACTCTTGAAGCACCCACACCAA 861
Query 11718 CAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCG 11777
|||||| || ||||| | || |||| ||| || |||||| || | ||| || |
Sbjct 860 CAAACAATTCTACAAACTCTGAAGCAGCACACGAGAAGAATGGCACCCCAGCTTCCCCGG 801
Query 11778 CGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGC 11815
| | ||| ||||| || || || ||||| ||||| |||
Sbjct 800 CCACGGCCCGGGCCAGAAGAGTTTTTCCGGTACCGGGC 763
>seq218924
Length=406
Score = 114 bits (126), Expect = 2e-20
Identities = 190/270 (70%), Gaps = 7/270 (3%)
Strand=Plus/Plus
Query 122671 TGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCC 122730
|| || || ||||||| ||||| | ||||||||||| || || ||||| || ||
Sbjct 113 TGAAGCCCTTCATCTCTTGAAATCAACTCATTTGAGAACGTTAATCCAGGCATTAGCCCA 172
Query 122731 CGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACAC 122790
|| || || ||||| |||||| |||||| || |||||||| || ||||| |||||
Sbjct 173 CGTTTTTTTAACCAGAAAATAGAGCAGAAACTACCTGAGAAGAAAATTCCCTCAACACAA 232
Query 122791 GCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGC-ATCAAACCATTTCATTGC 122849
|| ||||| |||| || || ||||| ||| || | | |||| ||| |||| ||
Sbjct 233 GCGAACGCCAAAATCCGCTCAGCGAA----CGATTCTGTACTGTCAATCCACTTCAACGC 288
Query 122850 CCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTGCTTCTT 122909
||| | ||||| |||| | || || ||||||| || || |||||| | |||||
Sbjct 289 CCAATCAGCCTTTTTCTTGACGCAGGGGACAGTTTCAATAGCACGGAATAACCGATTCTT 348
Query 122910 TTCAGATC-CATCCTTAATGTATTTGTCAA 122938
||| ||| |||||| || || | ||||
Sbjct 349 CTCA-ATCGAATCCTTGATATAGGTTTCAA 377
>seq273947
Length=700
Score = 105 bits (116), Expect = 8e-18
Identities = 163/231 (71%), Gaps = 5/231 (2%)
Strand=Plus/Minus
Query 122671 TGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCC 122730
|| |||||||| ||||| ||||| | ||||||||||| || || ||||| | ||
Sbjct 294 TGAAGACCCTCGTCTCGTGAAATCAACTCATTTGAGAATGTGAGTCCAGGCATTAATCCA 235
Query 122731 CGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACAC 122790
|| || |||||||| |||| | |||||| || ||||||||||| || || |||||
Sbjct 234 CGTTTTTTCAACCAGAAAATGGAGCAGAAGCTACCTGAGAAGAAGATTCCTTCAACACAA 175
Query 122791 GCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGC-ATCAAACCATTTCATTGC 122849
||||| || |||| || ||||| || ||| | ||| || | ||| || | ||
Sbjct 174 GCAAATGCCAAAATACGCTCGGCAAA----CGATTCCGTGCTGTCGATCCACTTTAACGC 119
Query 122850 CCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAA 122900
||| | |||||||||| | ||| || || || | ||| || ||||||
Sbjct 118 CCAATCAGCCTTCTTCTTGACACAGGGGACCGTCTCGATTGCACGAAATAA 68
>seq44487
Length=1401
Score = 104 bits (114), Expect = 3e-17
Identities = 216/319 (68%), Gaps = 16/319 (5%)
Strand=Plus/Minus
Query 11504 GTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAAT 11563
||||| ||||| || | ||| ||||| | ||||| |||||||| || || || |
Sbjct 392 GTGGCAGCAATTACAATAATCCCAGTGTTTCCCTCAAACCCATCCATTTCAGTTAGAAGC 333
Query 11564 TGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAG---CACTGCGT--- 11617
|| |||| ||||||||||| || ||||| | ||||||| || ||| |
Sbjct 332 TGGTTAAGTGTTTGTTCTCGTTCGTCATTCCC------ACCACCAATGCCAGTGCCTCTT 279
Query 11618 TGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCG 11677
|| || || |||||||| ||||||| || ||||| || ||| |||||| |||
Sbjct 278 TGACGTCCAACAGCATCAATTTCATCAACAAACACAATGCAAGGTGCATTTTCCTTGGCC 219
Query 11678 ATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTT 11737
| | |||||||| || || | ||||| | ||||||||||||||| ||||| |
Sbjct 218 TTCTTGAAGAGATCACGTACTCGAGAAGCACCAATACCAACAAACATCTCAACAAACTCA 159
Query 11738 GCGGCAGAGCACTG--GATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGA 11795
| | || | || || || |||||| || |||||| || ||||| ||| || |
Sbjct 158 GAACCTGA--AATGGAGAAAAACGGGACACCTGCTTCACCAGCAATGGCCTTGGCTAGCA 101
Query 11796 GGGTCTTTCCCGTACCTGG 11814
||||| || || |||||
Sbjct 100 AAGTCTTCCCAGTTCCTGG 82
>seq108436
Length=234
Score = 86.0 bits (94), Expect = 8e-12
Identities = 74/92 (80%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 111041 AAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTA 111100
||||| || ||| || ||||||||||| || | ||||||||||||||||| | |||
Sbjct 67 AAAATGAAAGTATCTGCAAGACCTTGAACCCCAATACCAATAGGTCTGTGTCTTAGATTT 126
Query 111101 GACTTTCGCGCAGTCTCAACGGGATAAAAATT 111132
||| ||| ||||||||||| |||||| ||||
Sbjct 127 GACCTTCTAGCAGTCTCAACAGGATAATAATT 158
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 625636748755200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |