Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq42289 134 2e-26 seq218924 114 2e-20 seq273947 105 8e-18 seq44487 104 3e-17 seq108436 86.0 8e-12 >seq42289 Length=1066 Score = 134 bits (148), Expect = 2e-26 Identities = 198/278 (71%), Gaps = 2/278 (1%) Strand=Plus/Minus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| ||||||||||| || | || ||||| || ||||| ||||||||||||||| | Sbjct 1039 AAACCCATCCATCTCAGTCAATAGCTGATTGATAGTTTGCTCTCTCTCATCATTTCCACC 980 Query 11599 CATACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACA 11658 | ||| || | | || | ||||| |||||||||||||||||||| ||||| || Sbjct 979 TCCAAGACCTGCCCCTCTCTGTCTCCCCACGGCATCAATCTCATCAATGAACACAATGCA 920 Query 11659 TGGTTGATTTTCGCG-GGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAA 11717 || | ||| | ||| | ||||| | || || || ||| ||||||||||||| Sbjct 919 AGGA-GCTTTGGACTTGGCTTTGTCAAACAAGTCCCGTACTCTTGAAGCACCCACACCAA 861 Query 11718 CAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCG 11777 |||||| || ||||| | || |||| ||| || |||||| || | ||| || | Sbjct 860 CAAACAATTCTACAAACTCTGAAGCAGCACACGAGAAGAATGGCACCCCAGCTTCCCCGG 801 Query 11778 CGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGC 11815 | | ||| ||||| || || || ||||| ||||| ||| Sbjct 800 CCACGGCCCGGGCCAGAAGAGTTTTTCCGGTACCGGGC 763 >seq218924 Length=406 Score = 114 bits (126), Expect = 2e-20 Identities = 190/270 (70%), Gaps = 7/270 (3%) Strand=Plus/Plus Query 122671 TGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCC 122730 || || || ||||||| ||||| | ||||||||||| || || ||||| || || Sbjct 113 TGAAGCCCTTCATCTCTTGAAATCAACTCATTTGAGAACGTTAATCCAGGCATTAGCCCA 172 Query 122731 CGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACAC 122790 || || || ||||| |||||| |||||| || |||||||| || ||||| ||||| Sbjct 173 CGTTTTTTTAACCAGAAAATAGAGCAGAAACTACCTGAGAAGAAAATTCCCTCAACACAA 232 Query 122791 GCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGC-ATCAAACCATTTCATTGC 122849 || ||||| |||| || || ||||| ||| || | | |||| ||| |||| || Sbjct 233 GCGAACGCCAAAATCCGCTCAGCGAA----CGATTCTGTACTGTCAATCCACTTCAACGC 288 Query 122850 CCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTGCTTCTT 122909 ||| | ||||| |||| | || || ||||||| || || |||||| | ||||| Sbjct 289 CCAATCAGCCTTTTTCTTGACGCAGGGGACAGTTTCAATAGCACGGAATAACCGATTCTT 348 Query 122910 TTCAGATC-CATCCTTAATGTATTTGTCAA 122938 ||| ||| |||||| || || | |||| Sbjct 349 CTCA-ATCGAATCCTTGATATAGGTTTCAA 377 >seq273947 Length=700 Score = 105 bits (116), Expect = 8e-18 Identities = 163/231 (71%), Gaps = 5/231 (2%) Strand=Plus/Minus Query 122671 TGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCC 122730 || |||||||| ||||| ||||| | ||||||||||| || || ||||| | || Sbjct 294 TGAAGACCCTCGTCTCGTGAAATCAACTCATTTGAGAATGTGAGTCCAGGCATTAATCCA 235 Query 122731 CGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACAC 122790 || || |||||||| |||| | |||||| || ||||||||||| || || ||||| Sbjct 234 CGTTTTTTCAACCAGAAAATGGAGCAGAAGCTACCTGAGAAGAAGATTCCTTCAACACAA 175 Query 122791 GCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGC-ATCAAACCATTTCATTGC 122849 ||||| || |||| || ||||| || ||| | ||| || | ||| || | || Sbjct 174 GCAAATGCCAAAATACGCTCGGCAAA----CGATTCCGTGCTGTCGATCCACTTTAACGC 119 Query 122850 CCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAA 122900 ||| | |||||||||| | ||| || || || | ||| || |||||| Sbjct 118 CCAATCAGCCTTCTTCTTGACACAGGGGACCGTCTCGATTGCACGAAATAA 68 >seq44487 Length=1401 Score = 104 bits (114), Expect = 3e-17 Identities = 216/319 (68%), Gaps = 16/319 (5%) Strand=Plus/Minus Query 11504 GTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAAT 11563 ||||| ||||| || | ||| ||||| | ||||| |||||||| || || || | Sbjct 392 GTGGCAGCAATTACAATAATCCCAGTGTTTCCCTCAAACCCATCCATTTCAGTTAGAAGC 333 Query 11564 TGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAG---CACTGCGT--- 11617 || |||| ||||||||||| || ||||| | ||||||| || ||| | Sbjct 332 TGGTTAAGTGTTTGTTCTCGTTCGTCATTCCC------ACCACCAATGCCAGTGCCTCTT 279 Query 11618 TGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCG 11677 || || || |||||||| ||||||| || ||||| || ||| |||||| ||| Sbjct 278 TGACGTCCAACAGCATCAATTTCATCAACAAACACAATGCAAGGTGCATTTTCCTTGGCC 219 Query 11678 ATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTT 11737 | | |||||||| || || | ||||| | ||||||||||||||| ||||| | Sbjct 218 TTCTTGAAGAGATCACGTACTCGAGAAGCACCAATACCAACAAACATCTCAACAAACTCA 159 Query 11738 GCGGCAGAGCACTG--GATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGA 11795 | | || | || || || |||||| || |||||| || ||||| ||| || | Sbjct 158 GAACCTGA--AATGGAGAAAAACGGGACACCTGCTTCACCAGCAATGGCCTTGGCTAGCA 101 Query 11796 GGGTCTTTCCCGTACCTGG 11814 ||||| || || ||||| Sbjct 100 AAGTCTTCCCAGTTCCTGG 82 >seq108436 Length=234 Score = 86.0 bits (94), Expect = 8e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 111041 AAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTA 111100 ||||| || ||| || ||||||||||| || | ||||||||||||||||| | ||| Sbjct 67 AAAATGAAAGTATCTGCAAGACCTTGAACCCCAATACCAATAGGTCTGTGTCTTAGATTT 126 Query 111101 GACTTTCGCGCAGTCTCAACGGGATAAAAATT 111132 ||| ||| ||||||||||| |||||| |||| Sbjct 127 GACCTTCTAGCAGTCTCAACAGGATAATAATT 158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 625636748755200