Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq273947 111 2e-19 seq218924 96.9 4e-15 seq42289 91.5 2e-13 >seq273947 Length=700 Score = 111 bits (122), Expect = 2e-19 Identities = 181/260 (70%), Gaps = 3/260 (1%) Strand=Plus/Minus Query 130028 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCC 130087 || ||||||||||| || || || | ||||| ||||| || || ||||| | || Sbjct 294 TGAAGACCCTCGTCTCGTGAAATCAACTCATTTGAGAATGTGAGTCCAGGCATTAATCCA 235 Query 130088 CGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACAC 130147 || || |||||||||||||| | || || || ||||||||||| || || ||||| Sbjct 234 CGTTTTTTCAACCAGAAAATGGAGCAGAAGCTACCTGAGAAGAAGATTCCTTCAACACAA 175 Query 130148 GCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCC 130207 || || || || | |||||| ||||| || | | | || | |||||| | |||| Sbjct 174 GCAAATGCCAAAATACGCTCGGCAAACGA---TTCCGTGCTGTCGATCCACTTTAACGCC 118 Query 130208 CACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTTT 130267 || | ||||| |||| || ||| ||||| |||| ||| || ||| | | |||| Sbjct 117 CAATCAGCCTTCTTCTTGACACAGGGGACCGTCTCGATTGCACGAAATAATCGACTCTTC 58 Query 130268 TCTGATGGATCTTTGATGTA 130287 || || ||||||||| || Sbjct 57 TCGTTTGAATCTTTGATATA 38 >seq218924 Length=406 Score = 96.9 bits (106), Expect = 4e-15 Identities = 134/186 (72%), Gaps = 5/186 (3%) Strand=Plus/Plus Query 130055 TCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAA 130114 ||||| ||||| | || ||||| || || || || || ||||||||||| | || Sbjct 140 TCATTTGAGAACGTTAATCCAGGCATTAGCCCACGTTTTTTTAACCAGAAAATAGAGCAG 199 Query 130115 AATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAG 130174 || || |||||||| || ||||| ||||| |||||||| || | |||||||| || Sbjct 200 AAACTACCTGAGAAGAAAATTCCCTCAACACAAGCGAACGCCAAAATCCGCTCAGCGAAC 259 Query 130175 GA-GCGGGACTTTGTATCAAACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGG 130233 || | | || | |||| |||||||| |||||| | |||||||||| || || || Sbjct 260 GATTCTGTAC----TGTCAATCCACTTCAACGCCCAATCAGCCTTTTTCTTGACGCAGGG 315 Query 130234 GACGGT 130239 ||| || Sbjct 316 GACAGT 321 >seq42289 Length=1066 Score = 91.5 bits (100), Expect = 2e-13 Identities = 188/277 (68%), Gaps = 2/277 (1%) Strand=Plus/Minus Query 14152 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGG 14211 ||| ||||||||||||||||| || |||||||| ||||| || | |||||||| || Sbjct 1039 AAACCCATCCATCTCAGTCAATAGCTGATTGATAGTTTGCTCTCTCTCATCATTTCCACC 980 Query 14212 CATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACA 14271 | ||| || | | || | || ||||| ||||| ||||| ||||| || || || Sbjct 979 TCCAAGACCTGCCCCTCTCTGTCTCCCCACGGCATCAATCTCATCAATGAACACAATGCA 920 Query 14272 TGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCA 14330 || | ||| || ||| ||||| | || || ||||| ||||| ||||| | Sbjct 919 AGG-AGCTTTGGACTTGGCTTTGTCAAACAAGTCCCGTACTCTTGAAGCACCCACACCAA 861 Query 14331 CAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCCG 14390 |||||| || ||||| | | || | ||| || ||| || || || ||| || | Sbjct 860 CAAACAATTCTACAAACTCTGAAGCAGCACACGAGAAGAATGGCACCCCAGCTTCCCCGG 801 Query 14391 CGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 14427 | | ||| ||||| || || || || || || || || Sbjct 800 CCACGGCCCGGGCCAGAAGAGTTTTTCCGGTACCGGG 764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 616076549990720