Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq44487 138 1e-27 seq42289 129 7e-25 seq273947 127 2e-24 seq218924 95.1 1e-14 >seq44487 Length=1401 Score = 138 bits (152), Expect = 1e-27 Identities = 275/400 (69%), Gaps = 22/400 (6%) Strand=Plus/Minus Query 9578 GTCGCGGCGATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAA 9635 || || || || |||| ||| || |||||| | |||| |||||||| || || | || Sbjct 392 GTGGCAGCAATTACAATAATCCCAGTGTTTCCCT--CAAACCCATCCATTTCAGTTAGAA 335 Query 9636 GTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAG---CACTGCGT- 9691 | ||||||| |||||||| ||||| |||||| | ||||||| || ||| | Sbjct 334 GCTGGTTAAGTGTTTGTTCTCGTTCGTCATTCCC------ACCACCAATGCCAGTGCCTC 281 Query 9692 --TGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAG 9749 || ||| || |||||||| ||||||| || || ||||| ||| |||||| | Sbjct 280 TTTGACGTCCAACAGCATCAATTTCATCAACAAACACAATGCAAGGTGCATTTTCCTTGG 221 Query 9750 CGACTTCA--AAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAA 9807 | |||| |||||||| ||||| || || || | ||||||||||||||| ||||| Sbjct 220 C--CTTCTTGAAGAGATCACGTACTCGAGAAGCACCAATACCAACAAACATCTCAACAAA 163 Query 9808 GTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGA 9866 | | | ||| || | || || |||||| | |||||| |||||||| ||| | Sbjct 162 CTCAGAACCTGAA-ATGGAGAAAAACGGGACACCTGCTTCACCAGCAATGGCCTTGGCTA 104 Query 9867 GAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGC 9926 | | |||||| || || ||||| ||| | ||||| ||||| ||||| || | Sbjct 103 GCAAAGTCTTCCCAGTTCCTGGAGGACCAACAAGGAGAACACCTTTAGGAATGCGAGCTC 44 Query 9927 CACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCAC 9966 || || | | ||||| || | ||||||||| ||||| Sbjct 43 CAACAGCAGTGAACCTCTCGGGCTTCTTAAGAAACTCCAC 4 >seq42289 Length=1066 Score = 129 bits (142), Expect = 7e-25 Identities = 276/408 (68%), Gaps = 6/408 (1%) Strand=Plus/Minus Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9672 ||| ||||||||||| ||||| || || || |||||||| || | |||||||| | Sbjct 1039 AAACCCATCCATCTCAGTCAATAGCTGATTGATAGTTTGCTCTCTCTCATCATTTCCACC 980 Query 9673 CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 9732 | ||| || | | || | |||||||||||||||||||||||||| || ||||| Sbjct 979 TCCAAGACCTGCCCCTCTCTGTCTCCCCACGGCATCAATCTCATCAATGAACACAATGCA 920 Query 9733 TGGTTGATTTTCGCGAGCGACT-TCAAAGAGATCCCGTACACGCTTG--GCGCCCACACC 9789 || | ||| | | | ||||| | |||||||| | ||| || |||||||| Sbjct 919 AGGA-GCTTTGGACTTGGCTTTGTCAAACAAGTCCCGTACTC--TTGAAGCACCCACACC 863 Query 9790 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACC 9849 |||||||| || ||||| | || || | ||| || ||| || || || ||| || Sbjct 862 AACAAACAATTCTACAAACTCTGAAGCAGCACACGAGAAGAATGGCACCCCAGCTTCCCC 803 Query 9850 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 9909 || | ||| ||||| |||||||| || || ||||| ||| || | ||||| || Sbjct 802 GGCCACGGCCCGGGCCAGAAGAGTTTTTCCGGTACCGGGCGGTCCAACAAGGAGACACCC 743 Query 9910 TCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAAT 9969 | ||| || || || ||| | ||| | ||||| | || | ||||| || | Sbjct 742 TTTTGGGATTTTAGCTCCAAGAGCTGTGTACTTATCAGGGTTTTTCAAGAAATCAACCAC 683 Query 9970 TTCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATCGGTAAA 10017 ||||| ||||||| ||||| |||| || ||||||| | ||| Sbjct 682 TTCTTGCAATTCAAGCTTGGCTTGGTCAGCTCCAGCAACATCAGCAAA 635 >seq273947 Length=700 Score = 127 bits (140), Expect = 2e-24 Identities = 351/529 (66%), Gaps = 17/529 (3%) Strand=Plus/Plus Query 94723 GCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT 94782 || ||| | || || || ||| | | ||||| || |||||||| | |||||| | || Sbjct 77 GCAATCGAGACGGTCCCCTGTGTCAAGAAGAAGGCTGATTGGGCGTTAAAGTGGATCGAC 136 Query 94783 ACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTC 94842 | | || || ||||| ||||| | || |||||||| |||||||| || |||||| Sbjct 137 AGCA---CGGAATCGTTTGCCGAGCGTATTTTGGCATTTGCTTGTGTTGAAGGAATCTTC 193 Query 94843 TTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTC 94902 ||||| ||| ||||||| | |||| ||| | || || || || | ||||| || ||| Sbjct 194 TTCTCAGGTAGCTTCTGCTCCATTTTCTGGTTGAAAAAACGTGGATTAATGCCTGGACTC 253 Query 94903 TGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC--GGTGG 94960 ||||| || ||| | || || || |||||||| || || || ||||| | | | Sbjct 254 ACATTCTCAAATGAGTTGATTTCACGAGACGAGGGTCTTCATTGCGATTTTGCTTGTTTG 313 Query 94961 AACTTTTCAAATTATTGCGTATTAAACCAACGACTGAGACT---ATTCATTCTATTGTTA 95017 | ||| ||| ||| | | |||| || ||||| | | || ||||||| Sbjct 314 TTGTATTC--ATTGTTGAGGAAGAAAC---TGAGTGAGAATCGAGTGAATGAGATTGTTA 368 Query 95018 AGGAAGCCGTTGAGATTGAGAAAGGATTCATATTGGATGCCCTTCCATGCGCTCTCATCG 95077 |||||||| || || |||| | |||| | | |||||| | || ||||| | | Sbjct 369 CCGAAGCCGTAGATATAGAGAGGGAATTCGTGTGTGATGCCTTGCCTGTTGCTCTAGTTG 428 Query 95078 GTATGAATTCTGAAAAAATGTCTGAATATATTGAGTATGTATCTGATAGATT-GTTGAAG 95136 | |||||| || ||| |||| ||||| | ||| | |||||||| |||| || Sbjct 429 GAATGAATGGCGATTTGATGAGCCAATACATTGAATTTGTGGCCGATAGATTGGTTGGAG 488 Query 95137 CAGATCGGGGTGCCTCCAATTTGGAA-CTCCAAGAATCCATTTGACTTCATGGAGAACAT 95195 | || || | ||| | || | ||| ||||||||||| | ||||| || Sbjct 489 CTTTAGGGTATGGC-AAAATCTATAATGTTCAA-AATCCATTTGATTGGATGGAATTGAT 546 Query 95196 TAGCCTCGACGGGAAGACAAACTTCTTCGAAAAGAGGGTTGGGGACTAT 95244 | | | |||||||| || ||||| ||||| || |||||||| ||| Sbjct 547 TTCATTGCAAGGGAAGACCAATTTCTTTGAAAAAAGAGTTGGGGAATAT 595 >seq218924 Length=406 Score = 95.1 bits (104), Expect = 1e-14 Identities = 168/245 (69%), Gaps = 9/245 (4%) Strand=Plus/Minus Query 94657 GAGACATACAGTAAACTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTC 94716 |||| |||||| ||| | || | ||||| |||||| ||||||||| | | | Sbjct 396 GAGATGTACAGTCTTCTCCTTGAAACCTATATCAAGGATTCGATTGAGAAGAATCGGTTA 337 Query 94717 TTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGG 94776 || || || |||| || || || | | || || || |||||||| |||||||| Sbjct 336 TTCCGTGCTATTGAAACTGTCCCCTGCGTCAAGAAAAAGGCTGATTGGGCGTTGAAGTGG 277 Query 94777 TTTGA---TACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAG 94833 |||| |||| | ||| || |||||||| | || || || || ||||||||| Sbjct 276 ATTGACAGTACAGAATCG------TTCGCTGAGCGGATTTTGGCGTTCGCTTGTGTTGAG 223 Query 94834 GGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATG 94893 || || |||||||| ||| |||||| |||||| ||| | || || || || || ||| Sbjct 222 GGAATTTTCTTCTCAGGTAGTTTCTGCTCTATTTTCTGGTTAAAAAAACGTGGGCTAATG 163 Query 94894 CCAGG 94898 || || Sbjct 162 CCTGG 158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 581036301634880