Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19]
305,112 sequences; 176,727,258 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq44487 138 1e-27
seq42289 129 7e-25
seq273947 127 2e-24
seq218924 95.1 1e-14
>seq44487
Length=1401
Score = 138 bits (152), Expect = 1e-27
Identities = 275/400 (69%), Gaps = 22/400 (6%)
Strand=Plus/Minus
Query 9578 GTCGCGGCGATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAA 9635
|| || || || |||| ||| || |||||| | |||| |||||||| || || | ||
Sbjct 392 GTGGCAGCAATTACAATAATCCCAGTGTTTCCCT--CAAACCCATCCATTTCAGTTAGAA 335
Query 9636 GTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAG---CACTGCGT- 9691
| ||||||| |||||||| ||||| |||||| | ||||||| || ||| |
Sbjct 334 GCTGGTTAAGTGTTTGTTCTCGTTCGTCATTCCC------ACCACCAATGCCAGTGCCTC 281
Query 9692 --TGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAG 9749
|| ||| || |||||||| ||||||| || || ||||| ||| |||||| |
Sbjct 280 TTTGACGTCCAACAGCATCAATTTCATCAACAAACACAATGCAAGGTGCATTTTCCTTGG 221
Query 9750 CGACTTCA--AAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAA 9807
| |||| |||||||| ||||| || || || | ||||||||||||||| |||||
Sbjct 220 C--CTTCTTGAAGAGATCACGTACTCGAGAAGCACCAATACCAACAAACATCTCAACAAA 163
Query 9808 GTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGA 9866
| | | ||| || | || || |||||| | |||||| |||||||| ||| |
Sbjct 162 CTCAGAACCTGAA-ATGGAGAAAAACGGGACACCTGCTTCACCAGCAATGGCCTTGGCTA 104
Query 9867 GAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGC 9926
| | |||||| || || ||||| ||| | ||||| ||||| ||||| || |
Sbjct 103 GCAAAGTCTTCCCAGTTCCTGGAGGACCAACAAGGAGAACACCTTTAGGAATGCGAGCTC 44
Query 9927 CACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCAC 9966
|| || | | ||||| || | ||||||||| |||||
Sbjct 43 CAACAGCAGTGAACCTCTCGGGCTTCTTAAGAAACTCCAC 4
>seq42289
Length=1066
Score = 129 bits (142), Expect = 7e-25
Identities = 276/408 (68%), Gaps = 6/408 (1%)
Strand=Plus/Minus
Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9672
||| ||||||||||| ||||| || || || |||||||| || | |||||||| |
Sbjct 1039 AAACCCATCCATCTCAGTCAATAGCTGATTGATAGTTTGCTCTCTCTCATCATTTCCACC 980
Query 9673 CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 9732
| ||| || | | || | |||||||||||||||||||||||||| || |||||
Sbjct 979 TCCAAGACCTGCCCCTCTCTGTCTCCCCACGGCATCAATCTCATCAATGAACACAATGCA 920
Query 9733 TGGTTGATTTTCGCGAGCGACT-TCAAAGAGATCCCGTACACGCTTG--GCGCCCACACC 9789
|| | ||| | | | ||||| | |||||||| | ||| || ||||||||
Sbjct 919 AGGA-GCTTTGGACTTGGCTTTGTCAAACAAGTCCCGTACTC--TTGAAGCACCCACACC 863
Query 9790 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACC 9849
|||||||| || ||||| | || || | ||| || ||| || || || ||| ||
Sbjct 862 AACAAACAATTCTACAAACTCTGAAGCAGCACACGAGAAGAATGGCACCCCAGCTTCCCC 803
Query 9850 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 9909
|| | ||| ||||| |||||||| || || ||||| ||| || | ||||| ||
Sbjct 802 GGCCACGGCCCGGGCCAGAAGAGTTTTTCCGGTACCGGGCGGTCCAACAAGGAGACACCC 743
Query 9910 TCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAAT 9969
| ||| || || || ||| | ||| | ||||| | || | ||||| || |
Sbjct 742 TTTTGGGATTTTAGCTCCAAGAGCTGTGTACTTATCAGGGTTTTTCAAGAAATCAACCAC 683
Query 9970 TTCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATCGGTAAA 10017
||||| ||||||| ||||| |||| || ||||||| | |||
Sbjct 682 TTCTTGCAATTCAAGCTTGGCTTGGTCAGCTCCAGCAACATCAGCAAA 635
>seq273947
Length=700
Score = 127 bits (140), Expect = 2e-24
Identities = 351/529 (66%), Gaps = 17/529 (3%)
Strand=Plus/Plus
Query 94723 GCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT 94782
|| ||| | || || || ||| | | ||||| || |||||||| | |||||| | ||
Sbjct 77 GCAATCGAGACGGTCCCCTGTGTCAAGAAGAAGGCTGATTGGGCGTTAAAGTGGATCGAC 136
Query 94783 ACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTC 94842
| | || || ||||| ||||| | || |||||||| |||||||| || ||||||
Sbjct 137 AGCA---CGGAATCGTTTGCCGAGCGTATTTTGGCATTTGCTTGTGTTGAAGGAATCTTC 193
Query 94843 TTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTC 94902
||||| ||| ||||||| | |||| ||| | || || || || | ||||| || |||
Sbjct 194 TTCTCAGGTAGCTTCTGCTCCATTTTCTGGTTGAAAAAACGTGGATTAATGCCTGGACTC 253
Query 94903 TGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC--GGTGG 94960
||||| || ||| | || || || |||||||| || || || ||||| | | |
Sbjct 254 ACATTCTCAAATGAGTTGATTTCACGAGACGAGGGTCTTCATTGCGATTTTGCTTGTTTG 313
Query 94961 AACTTTTCAAATTATTGCGTATTAAACCAACGACTGAGACT---ATTCATTCTATTGTTA 95017
| ||| ||| ||| | | |||| || ||||| | | || |||||||
Sbjct 314 TTGTATTC--ATTGTTGAGGAAGAAAC---TGAGTGAGAATCGAGTGAATGAGATTGTTA 368
Query 95018 AGGAAGCCGTTGAGATTGAGAAAGGATTCATATTGGATGCCCTTCCATGCGCTCTCATCG 95077
|||||||| || || |||| | |||| | | |||||| | || ||||| | |
Sbjct 369 CCGAAGCCGTAGATATAGAGAGGGAATTCGTGTGTGATGCCTTGCCTGTTGCTCTAGTTG 428
Query 95078 GTATGAATTCTGAAAAAATGTCTGAATATATTGAGTATGTATCTGATAGATT-GTTGAAG 95136
| |||||| || ||| |||| ||||| | ||| | |||||||| |||| ||
Sbjct 429 GAATGAATGGCGATTTGATGAGCCAATACATTGAATTTGTGGCCGATAGATTGGTTGGAG 488
Query 95137 CAGATCGGGGTGCCTCCAATTTGGAA-CTCCAAGAATCCATTTGACTTCATGGAGAACAT 95195
| || || | ||| | || | ||| ||||||||||| | ||||| ||
Sbjct 489 CTTTAGGGTATGGC-AAAATCTATAATGTTCAA-AATCCATTTGATTGGATGGAATTGAT 546
Query 95196 TAGCCTCGACGGGAAGACAAACTTCTTCGAAAAGAGGGTTGGGGACTAT 95244
| | | |||||||| || ||||| ||||| || |||||||| |||
Sbjct 547 TTCATTGCAAGGGAAGACCAATTTCTTTGAAAAAAGAGTTGGGGAATAT 595
>seq218924
Length=406
Score = 95.1 bits (104), Expect = 1e-14
Identities = 168/245 (69%), Gaps = 9/245 (4%)
Strand=Plus/Minus
Query 94657 GAGACATACAGTAAACTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTC 94716
|||| |||||| ||| | || | ||||| |||||| ||||||||| | | |
Sbjct 396 GAGATGTACAGTCTTCTCCTTGAAACCTATATCAAGGATTCGATTGAGAAGAATCGGTTA 337
Query 94717 TTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGG 94776
|| || || |||| || || || | | || || || |||||||| ||||||||
Sbjct 336 TTCCGTGCTATTGAAACTGTCCCCTGCGTCAAGAAAAAGGCTGATTGGGCGTTGAAGTGG 277
Query 94777 TTTGA---TACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAG 94833
|||| |||| | ||| || |||||||| | || || || || |||||||||
Sbjct 276 ATTGACAGTACAGAATCG------TTCGCTGAGCGGATTTTGGCGTTCGCTTGTGTTGAG 223
Query 94834 GGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATG 94893
|| || |||||||| ||| |||||| |||||| ||| | || || || || || |||
Sbjct 222 GGAATTTTCTTCTCAGGTAGTTTCTGCTCTATTTTCTGGTTAAAAAAACGTGGGCTAATG 163
Query 94894 CCAGG 94898
|| ||
Sbjct 162 CCTGG 158
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 581036301634880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |