Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19]
305,112 sequences; 176,727,258 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq273947 118 1e-21
seq218924 102 9e-17
>seq273947
Length=700
Score = 118 bits (130), Expect = 1e-21
Identities = 212/307 (69%), Gaps = 2/307 (1%)
Strand=Plus/Plus
Query 59825 TATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAA 59884
||||||||| |||| |||| || | |||| | | |||| ||| | | |||||
Sbjct 1 TATCCACTCTGAGATGTACAGTCTTCTTCTCGAAACTTATATCAAAGATTCAAACGAGAA 60
Query 59885 GGCTGGTCTGTTCCGTGCCATAGAGACGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGC 59944
| | | | || ||||| || |||||| |||| || || | || || || |||||
Sbjct 61 GAGTCGATTATTTCGTGCAATCGAGACGGTCCCCTGTGTCAAGAAGAAGGCTGATTGGGC 120
Query 59945 CATGCAGTGGAT-GAGTCCTGGAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGCG 60003
| ||||||| || | | | ||| ||||| | ||| | | || ||||| || |
Sbjct 121 GTTAAAGTGGATCGACAGCACG-GAATCGTTTGCCGAGCGTATTTTGGCATTTGCTTGTG 179
Query 60004 TGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCC 60063
| ||||||||||||||||| || ||||| | ||||||||| | ||||| |||||
Sbjct 180 TTGAAGGAATCTTCTTCTCAGGTAGCTTCTGCTCCATTTTCTGGTTGAAAAAACGTGGAT 239
Query 60064 TCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGG 60123
| ||||| || || | ||||| || ||| ||||||| || |||||||| || ||| |
Sbjct 240 TAATGCCTGGACTCACATTCTCAAATGAGTTGATTTCACGAGACGAGGGTCTTCATTGCG 299
Query 60124 AGTTTGC 60130
| |||||
Sbjct 300 ATTTTGC 306
>seq218924
Length=406
Score = 102 bits (112), Expect = 9e-17
Identities = 211/310 (68%), Gaps = 8/310 (3%)
Strand=Plus/Minus
Query 59825 TATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAA 59884
||||||||| |||| |||| || | | || | | |||||||| || |||||
Sbjct 406 TATCCACTCTGAGATGTACAGTCTTCTCCTTGAAACCTATATCAAGGATTCGATTGAGAA 347
Query 59885 GGCTGGTCTGTTCCGTGCCATAGAGAC-GTCCCCCGCAGTTAAACAAAAAGCAGAATGGG 59943
| | | | |||||||| || || || |||||| || || || |||| || || ||||
Sbjct 346 GAATCGGTTATTCCGTGCTATTGAAACTGTCCCCTGC-GTCAAGAAAAAGGCTGATTGGG 288
Query 59944 CCATGCAGTGGATG---AGTCCTGGAGCATCATTTGCACAACGTCTCATAGCTTTTGCAT 60000
| || ||||||| ||| | || ||| || || | || | | || || || |
Sbjct 287 CGTTGAAGTGGATTGACAGTAC---AGAATCGTTCGCTGAGCGGATTTTGGCGTTCGCTT 231
Query 60001 GCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTG 60060
| || || ||||| |||||||| || ||||| ||||||||||| | ||||| ||||
Sbjct 230 GTGTTGAGGGAATTTTCTTCTCAGGTAGTTTCTGCTCTATTTTCTGGTTAAAAAAACGTG 171
Query 60061 GCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATC 60120
| || ||||| || | | ||||| || ||| ||||||| | || || || || |||
Sbjct 170 GGCTAATGCCTGGATTAACGTTCTCAAATGAGTTGATTTCAAGAGATGAAGGGCTTCATT 111
Query 60121 AGGAGTTTGC 60130
|| |||||
Sbjct 110 GTGATTTTGC 101
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 546432781265280
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |