Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq280556 127 1e-24 seq48980 114 8e-21 seq279770 113 3e-20 seq21568 109 3e-19 seq277496 102 5e-17 seq126021 102 5e-17 seq281289 100 2e-16 seq44495 98.7 6e-16 >seq280556 Length=777 Score = 127 bits (140), Expect = 1e-24 Identities = 170/230 (74%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG-- 34537 || || | |||||||| |||||| || || || |||||||||||||||||||| | Sbjct 535 CCTCCACGAAGACGCAGCACCAAGTGAAGTGTCGATTCCTTTTGAATGTTATAATCGGCT 594 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 ||||| | || | ||||| | ||| || || || || ||||| | |||||||| || | Sbjct 595 AAAGTCCT-GC-CATCTTCCAATTGCTTCCCAGCGAAAATTAACCTTTGTTGGTCTGGTG 652 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCC 34656 | | || || || ||| |||| || | ||||||| || ||| || ||| ||||| Sbjct 653 GGATCCCTTCTTTATCTTGGATC-TTAGCTTTAACGTTATCAATAGTATCTGAACTCTCA 711 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||||| || || ||||| || ||||| || ||||||||||| ||||| Sbjct 712 ACTTCCAAAGTGATTGTTTTTCCTGTTAAGGTCTTCACAAAAATTTGCAT 761 >seq48980 Length=3483 Score = 114 bits (126), Expect = 8e-21 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 34495 AACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCT 34554 || || | |||||| ||| |||||| || ||||| || || | ||||||||| | || Sbjct 1035 AAGACAAGATGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGTGTTCGACCATCC 976 Query 34555 TCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCT 34614 || | || |||||||| || || | |||||| ||||||||||| | ||||||||| || Sbjct 975 TCCATCTGCTTACCGGCGAAAATGAGACGCTGCTGGTCCGGCGGTATTCCCTCCTTATC- 917 Query 34615 GTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGT 34673 ||| |||| || || || || || || ||||| || || | ||||| || Sbjct 916 CTGAATCTTTGCCTTGACATTATCGATGGTATCAGAACTCTCGACCTCGAGAGTTATGGT 857 Query 34674 TTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 || ||||| | ||||||||| || |||||||| ||| Sbjct 856 CTTCCCGGTAAGCGTTTTCACGAAGATCTGCATATTG 820 >seq279770 Length=767 Score = 113 bits (124), Expect = 3e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 34497 CACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTC 34556 |||||||||||| || ||||| || || || ||||| | ||| ||||| |||| || Sbjct 391 CACCAAATGGAGTGTAGATTCCTTCTGGATATTGTAATCGGCAAGCGTTCGGCCGTCCTC 332 Query 34557 AAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGT 34616 |||||| ||||| ||||| || | | ||||||||| || || | ||||| || ||| Sbjct 331 AAGTTGCTTACCAGCAAAGATAAGCCTCTGTTGGTCGGGTGGAATGCCCTCTTTATCTTG 272 Query 34617 GATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 |||||| |||| |||||||||| ||| ||||| || | ||| || ||||| Sbjct 271 AATCTTTGCCTTTACATTGTCAATTGTGTCTGAGCTTTCCACCTCGAGGGTGATTGTTTT 212 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || | ||||| || || || ||||| Sbjct 211 GCCAGTGAGGGTTTTTACGAAGATTTGCAT 182 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | |||||||| || || ||||| ||||| || || || | Sbjct 636 CCCCCACGAAGACGAAGAACCAAATGCAGGGTAGATTCCTTCTGAATATTGTAGTCGGCG 577 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || ||||| |||| ||||| || ||||| ||||| || | | |||||| || || || Sbjct 576 AGAGTTCGACCGTCCTCAAGCTGCTTACCAGCAAAAATCAGTCTCTGTTGATCAGGTGGG 517 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | |||||||||||| ||| ||| | || || | |||||| || || ||||| Sbjct 516 ATACCCTCCTTGTCTTGGAT-TTTAGCCTTGACATTGTCAATTGTATCAGAACTTTCCAC 458 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | || || ||||| || || | || |||||||| || ||||| Sbjct 457 CTCAAGAGTAATGGTTTTGCCAGTAAGGGTCTTCACAAATATTTGCAT 410 Score = 86.0 bits (94), Expect = 4e-12 Identities = 95/124 (77%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 34584 CTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTG 34642 ||||||||| || || | |||||||| ||| ||||| | ||| || || ||||| Sbjct 760 CTGTTGGTCAGGTGGAATGCCCTCCTTATCTTGAATCTTA-GCTTTCACATTATCAATTG 702 Query 34643 TGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCT 34702 | || |||||||||||||| || || ||||| || || || |||||||||||||||| Sbjct 701 TATCAGAGCTCTCCACTTCCAAAGTAATTGTTTTGCCAGTCAAGGTTTTCACAAAAATCT 642 Query 34703 GCAT 34706 |||| Sbjct 641 GCAT 638 >seq21568 Length=652 Score = 109 bits (120), Expect = 3e-19 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || || | ||||||||| ||||| |||||||| ||||| ||||||| || |||| Sbjct 320 AGTCGAAGCACCAAATGCAGAGTTGATTCCTTTTGGATGTTGTAATCTGCTAGAGTTCTG 379 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| ||||| || || ||||| || | | ||| ||||| || || | |||||| Sbjct 380 CCATCTTCCAGTTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGTGGGATTCCCTCT 439 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| |||||| || || || | || ||||| || || ||||||| || Sbjct 440 TTGTCTTGAATCTTT-GTCTTCACATTGTCGATGGTGTCGGAACTTTCTACTTCCAAAGT 498 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || || || ||||| ||||||||||| Sbjct 499 GATGGTCTTGCCAGTCAATGTCTTCACGAAAATCTGCAT 537 >seq277496 Length=739 Score = 102 bits (112), Expect = 5e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || ||||| | ||| ||||| || || || ||||||||| ||||||||||||| | Sbjct 276 CCTCCCCTAAGCCTCAAGACCAAGTGAAGGGTTGACTCCTTTTGGATGTTATAATCTGCA 217 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || ||||| | ||||| | ||| ||||| ||||| ||||| | ||| ||||| || || Sbjct 216 AGCGTTCGACCATCTTCCAATTGCTTACCAGCAAAAATTAATCTCTGCTGGTCAGGAGGA 157 Query 34600 ACTCCCTCCTTGTC 34613 | || |||||||| Sbjct 156 ATACCTTCCTTGTC 143 >seq126021 Length=250 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | ||| | || |||||| ||||||||||||||| ||||| | Sbjct 243 CCACCACGAAGACGGAGCACAAGGTGAAGAGTGGACTCCTTTTGAATGTTGTAATCGGCT 184 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| || | ||||| || || || || ||||| || || | || || ||||| || Sbjct 183 AGTGTACGACCATCTTCGAGCTGCTTGCCTGCAAAGATCAACCTTTGCTGATCCGGGGGA 124 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || ||||||||| ||| || | ||| || | |||||||| ||| || || Sbjct 123 ATACCTTCCTTGTCT-TGAATCTTAGCTTTGACATTGTCGATTGTGTCAGAGCTTTCAAC 65 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | || || || || || || | |||||| || ||||| ||||| Sbjct 64 TTCTAGTGTAATAGTCTTCCCCGTGAGCGTTTTGACGAAAATTTGCAT 17 >seq281289 Length=787 Score = 100 bits (110), Expect = 2e-16 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG-- 34537 || || | |||||| | ||||||||| | || ||||| ||||| || || || | Sbjct 780 CCACCACGAAGACGGAGCACCAAATGCAATGTTGATTCCTTCTGAATATTGTAGTCCGCC 721 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 |||||| || | ||||||||||||||||| || || |||| | ||| ||||| || | Sbjct 720 AAAGTG--CGGCCATCTTCAAGTTGTTTACCAGCGAAAATTAGTCTCTGCTGGTCAGGGG 663 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCC 34656 | | |||||| || ||| |||| || | || || || || || || ||| ||| Sbjct 662 GGATTCCCTCTTTATCTTGGATC-TTAGCCTTCACATTATCGATGGTATCAGAGCTTTCC 604 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || | ||| || |||||||| || | |||||||| || || ||||| Sbjct 603 ACCTCTAAGGTGATGGTTTTACCAGTGAGGGTTTTCACGAAGATTTGCAT 554 Score = 82.4 bits (90), Expect = 5e-11 Identities = 150/217 (69%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 34491 ACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTC 34550 ||| | |||||| || || || || ||||| ||||||||||| | || ||||| | Sbjct 541 ACGGAGCACCAAGTGAAGGGTTGATTCTTTTTGTATGTTATAATCGGCGAGGGTTCGACC 482 Query 34551 GTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTT 34610 || || || || || || ||||| || | | || ||||| || || | |||||| || Sbjct 481 ATCCTCGAGCTGCTTTCCAGCAAAAATAAGCCTTTGCTGGTCTGGAGGGATTCCCTCTTT 422 Query 34611 GTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTA 34669 || ||| ||| | || || | ||| || || || ||||| || | ||||| Sbjct 421 ATC-CTGAATTTTGGCCTTCACATTGTCAATAGTATCAGAACTTTCCACCTCAAGGGTTA 363 Query 34670 TCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | ||||| ||||| | ||||||||||| || ||||| Sbjct 362 TTGTTTTGCCGGTGAGAGTTTTCACAAAGATTTGCAT 326 >seq44495 Length=1402 Score = 98.7 bits (108), Expect = 6e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || || ||||| | |||||| || || || |||||| || |||||||| || | Sbjct 920 CCACCCCTGAGACGAAGCACCAAGTGCAGGGTTGACTCCTTCTGGATGTTATAGTCAGCC 979 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || | | ||||| || || || || || || || | | ||| ||||| || || Sbjct 980 AAAGTCCTACCATCTTCCAGCTGCTTTCCAGCGAAGATCAGCCTCTGCTGGTCTGGTGGG 1039 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||||| |||| || | || ||| | ||| ||||| ||||| || Sbjct 1040 ATTCCCTCCTTGTCTTGGATC-TTAGCCTTGACGTTGTCAATGGTGTCCGAACTCTCAAC 1098 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | ||| || || || ||||| ||||| || || ||||||||||| Sbjct 1099 CTCTAAGGTGATGGTCTTGCCGGTCAACGTCTTGACGAAAATCTGCAT 1146 Score = 98.7 bits (108), Expect = 6e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||||||||| | || ||||| |||||| || ||||||||||| | | Sbjct 1148 CCACCACGAAGACGCAACACAAGGTGAAGAGTCGACTCCTTCTGGATGTTATAATCGGCA 1207 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || || ||||| || ||||| || || | | || ||||| || || Sbjct 1208 AGGGTACGACCATCCTCTAGTTGCTTCCCGGCGAAGATAAGTCTTTGCTGGTCTGGGGGA 1267 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| |||| |||| |||||| || || || || | || || Sbjct 1268 ATACCCTCCTTGTCCTGGATC-TTTGCCTTAACGTTATCGATGGTATCAGAGGATTCAAC 1326 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | ||| || |||||||| || | || || || ||||| ||||| Sbjct 1327 CTCGAGGGTGATGGTTTTACCTGTCAGGGTCTTTACGAAAATTTGCAT 1374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 313559261459096