Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq279770 118 9e-22 seq126021 113 4e-20 seq21568 113 4e-20 seq280556 109 5e-19 seq281664 98.7 9e-16 seq44495 98.7 9e-16 seq277496 82.4 7e-11 >seq279770 Length=767 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| |||||||| || || || || ||||| | ||||||||||| |||||| || Sbjct 410 ATGCAAATATTTGTGAAGACCCTTACTGGCAAAACCATTACTCTTGAGGTGGAAAGTTCT 469 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | ||||| ||||| |||||||| || || || ||||| |||||| Sbjct 470 GATACAATTGACAATGTCAAGGCTAAAATCCAAGACAAGGAGGGTATCCCACCTGATCAA 529 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || || || || | || ||| || || | |||| ||||| Sbjct 530 CAGAGACTGATTTTTGCTGGTAAGCAGCTTGAGGACGGTCGAACTCTCGCCGACTACAAT 589 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| ||||| || ||| | ||||||||| | ||| | || || || || Sbjct 590 ATTCAGAAGGAATCTACCCTGCATTTGGTTCTTCGTCTTCGTGGGGGTAT 639 >seq126021 Length=250 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || ||||| || || || ||| ||||||| || ||||| ||| || Sbjct 17 ATGCAAATTTTCGTCAAAACGCTCACGGGGAAGACTATTACACTAGAAGTTGAAAGCTCT 76 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | |||||| || ||||||||||| ||||| || || || ||||| Sbjct 77 GACACAATCGACAATGTCAAAGCTAAGATTCAAGACAAGGAAGGTATTCCCCCGGATCAG 136 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | || || | || ||||| || | ||||| || || | ||||||||||| Sbjct 137 CAAAGGTTGATCTTTGCAGGCAAGCAGCTCGAAGATGGTCGTACACTAGCCGATTACAAC 196 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||||||||| || | || | || | ||| | || ||||| || Sbjct 197 ATTCAAAAGGAGTCCACTCTTCACCTTGTGCTCCGTCTTCGTGGTGGAAT 246 >seq21568 Length=652 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||| |||||| | || ||| | ||||| ||| ||| Sbjct 537 ATGCAGATTTTCGTGAAGACATTGACTGGCAAGACCATCACTTTGGAAGTAGAAAGTTCC 478 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || ||| |||||||||||||| || || ||||| || || Sbjct 477 GACACCATCGACAATGTGAAGACAAAGATTCAAGACAAAGAGGGAATCCCACCTGACCAG 418 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || ||||| ||| ||||||| | || | | ||||||||| Sbjct 417 CAGAGGCTGATCTTTGCAGGCAAGCAACTGGAAGATGGCAGAACTCTAGCAGATTACAAC 358 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || |||||||| || || | |||||||| | || |||| ||||| || Sbjct 357 ATCCAAAAGGAATCAACTCTGCATTTGGTGCTTCGACTGCGTGGTGGGAT 308 Score = 82.4 bits (90), Expect = 7e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 27071 AAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAA 27130 ||| ||||||||||| || || || || || ||||||||| | || || | || || || Sbjct 232 AAAGATTCAAGACAAGGAGGGGATTCCTCCAGATCAACAGAGATTGATCTTTGCTGGAAA 173 Query 27131 ACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACA 27190 ||||||||| || || ||| | | |||||||| ||||| || ||||| ||| | || Sbjct 172 ACAATTGGAGGATGGTCGGACTTTGGCTGATTACAATATTCAGAAAGAGTCCACCCTCCA 113 Query 27191 TTTGGTTTTGCGTTTGCGGGGTGGC 27215 | || | || |||| |||||| Sbjct 112 CCTTGTCCTCCGCCTGCGCGGTGGC 88 >seq280556 Length=777 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || | || || || | || ||| | ||||| || || Sbjct 761 ATGCAAATTTTTGTGAAGACCTTAACAGGAAAAACAATCACTTTGGAAGTTGAGAGTTCA 702 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || ||| || || ||||| |||||||| || ||||| || ||| Sbjct 701 GATACTATTGATAACGTTAAAGCTAAGATCCAAGATAAAGAAGGGATCCCACCAGACCAA 642 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | ||||| | ||| || || ||||||||||| | ||| | ||||||| ||| Sbjct 641 CAAAGGTTAATTTTCGCTGGGAAGCAATTGGAAGATGGCAGGACTTTAGCCGATTATAAC 582 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||||| ||||| | || ||||| ||||| | || || || || Sbjct 581 ATTCAAAAGGAATCGACACTTCACTTGGTGCTGCGTCTTCGTGGAGGGAT 532 >seq281664 Length=792 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || ||||| || ||| | || || | || ||||| || Sbjct 320 ATGCAGATCTTTGTCAAGACCCTGACAGGGAAGACCATCACCTTGGAGGTGGAGAGTTCT 261 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || || |||||| || ||||| ||||| || || || || || Sbjct 260 GATACAATCGACAATGTTAAGGCAAAAATCCAGGACAAGGAAGGAATTCCTCCAGACCAG 201 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| || || | || || || || ||||||| | |||| || | ||||||||| Sbjct 200 CAGCGGTTGATCTTTGCTGGAAAGCAGCTGGAAGATGGAAGGACCCTTGCTGATTACAAC 141 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| |||||||| ||| | || | || | ||| | || ||||| Sbjct 140 ATTCAGAAGGAGTCTACCCTTCACCTTGTCCTCCGTCTCCGTGGTGG 94 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||| |||| || ||| | || || || || || || || Sbjct 548 ATGCAGATCTTCGTTAAGACTTTGACTGGAAAGACCATCACCCTCGAGGTCGAGAGCTCT 489 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || || ||||||||| ||||| |||||||| || || || || Sbjct 488 GATACCATCGACAACGTGAAGGCAAAAATTCAGGACAAGGAAGGCATCCCCCCAGACCAG 429 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | || || | ||||| || || |||| || | ||| || | || |||||| Sbjct 428 CAAAGATTGATCTTTGCCGGAAAGCAGCTGGAGGATGGAAGGACTCTTGCTGACTACAAC 369 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| |||||||| ||| | || | || | ||| || |||| || || Sbjct 368 ATTCAGAAGGAGTCAACCCTTCACCTTGTCCTTCGTCTGAGGGGAGGAAT 319 >seq44495 Length=1402 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||||| ||| | || || || || ||||| || Sbjct 918 ATGCAGATCTTCGTGAAGACCTTGACCGGAAAGACCATCACCCTGGAGGTGGAGAGCTCT 859 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| || | || ||| |||||||| ||||| |||||||| || || ||||| Sbjct 858 GACACGATCGATAATGTGAAAGCTAAAATTCAGGACAAGGAAGGCATCCCTCCGGATCAG 799 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | ||| || || || | || || | ||| | | ||||||||| Sbjct 798 CAGAGGCTGATCTTCGCTGGGAAGCAGCTTGAGGATGGAAGGACTCTCGCTGATTACAAC 739 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| |||||||| || | || | || ||||| | || ||||| Sbjct 738 ATTCAGAAGGAGTCCACTCTTCACCTCGTCCTGCGTCTCCGTGGTGG 692 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||||||||| | || || | || || || || Sbjct 1146 ATGCAGATTTTCGTCAAGACGTTGACCGGCAAGACCATCACCTTAGAGGTTGAGAGTTCG 1087 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| || || |||||||| || || || ||||| || || Sbjct 1086 GACACCATTGACAACGTCAAGGCTAAGATCCAAGACAAGGAGGGAATCCCACCAGACCAG 1027 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | ||| || || || ||||||| || ||| | | || || ||| Sbjct 1026 CAGAGGCTGATCTTCGCTGGAAAGCAGCTGGAAGATGGTAGGACTTTGGCTGACTATAAC 967 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| ||| | || ||||| | ||| | ||||||| || Sbjct 966 ATCCAGAAGGAGTCAACCCTGCACTTGGTGCTTCGTCTCAGGGGTGGGAT 917 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || ||||| || ||||| || || | || || || || || ||| | || Sbjct 1374 ATGCAAATTTTCGTAAAGACCCTGACAGGTAAAACCATCACCCTCGAGGTTGAATCCTCT 1315 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || || ||| || || ||||| || || || || || || || Sbjct 1314 GATACCATCGATAACGTTAAGGCAAAGATCCAGGACAAGGAGGGTATTCCCCCAGACCAG 1255 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | | || | |||||| || ||| | || || || ||| || ||||||| ||| Sbjct 1254 CAAAGACTTATCTTCGCCGGGAAGCAACTAGAGGATGGTCGTACCCTTGCCGATTATAAC 1195 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||||||||| | || | || |||||| | || ||||| || Sbjct 1194 ATCCAGAAGGAGTCGACTCTTCACCTTGTGTTGCGTCTTCGTGGTGGTAT 1145 >seq277496 Length=739 Score = 82.4 bits (90), Expect = 7e-11 Identities = 96/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 27075 ATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAA 27134 || || ||||| ||||| || || || || || ||| | ||||| | || || || ||| Sbjct 137 ATGCAGGACAAGGAAGGTATTCCTCCTGACCAGCAGAGATTAATTTTTGCTGGTAAGCAA 196 Query 27135 TTGGAAGACAGTTCGACCG-TTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTT 27193 |||||||| | |||| || || | ||||| ||||| ||||||||||| ||| | || || Sbjct 197 TTGGAAGA-TGGTCGAACGCTTGCAGATTATAACATCCAAAAGGAGTCAACCCTTCACTT 255 Query 27194 GGTTTTG 27200 ||| ||| Sbjct 256 GGTCTTG 262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433304321197016