Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_028859.1 Length=42881 Score E Sequences producing significant alignments: (Bits) Value seq224806 279 1e-70 >seq224806 Length=425 Score = 279 bits (308), Expect = 1e-70 Identities = 315/422 (75%), Gaps = 0/422 (0%) Strand=Plus/Minus Query 40813 TCAATGAATCAAGATTTATATCAAGATACGTTATACGGTCAACGTGTTGGAAACTATAAA 40872 |||||||| ||||| || |||||||||||| |||| || |||||||| || |||||| | Sbjct 423 TCAATGAACCAAGACTTGTATCAAGATACGCTATATGGACAACGTGTAGGTAACTATTCA 364 Query 40873 GATTATGGCATGTACTGGATTAAAAACGAAGTCAAACCGGATGCAATCATAGAGTTTCAT 40932 ||||| || | || ||| ||||||| | || ||||| |||| || |||| || || Sbjct 363 GATTACGGTTTATATTGGGTTAAAAAGAACGTGAAACCTGATGTGATTGTAGAATTCCAC 304 Query 40933 TTAGATTCTGCTAGTCCACAAGCAAGTGGCGGGCATGTAATCATTAGCGACCGTTTCCCA 40992 |||||| ||||||||||||||||||||||||| ||||| || | |||||| | | || Sbjct 303 TTAGATGCTGCTAGTCCACAAGCAAGTGGCGGACATGTCATTGTAAGCGACAGATATCCT 244 Query 40993 GCTGATGACATTGACAAGGCATTAAGTAGCGCATTAGATAAAACAGTAGGAAAAATAAGA 41052 || || || || ||||| || || |||||| ||| ||| ||||| || ||||| ||| Sbjct 243 GCAGACGATATAGACAAAGCGGTATCTAGCGCTCTAGGTAAGACAGTTGGCAAAATTAGA 184 Query 41053 GGTGTGACACCTAGAGGGGATTTATTGAACGCTAACGTGTCCGCTGAACTTAATCTTAAT 41112 || |||||||||||| |||||||| || |||||||| | | |||| ||| | ||| Sbjct 183 GGCGTGACACCTAGAAACGATTTATTAAATGCTAACGTTACTGGACAACTCAATTTAAAT 124 Query 41113 TATCGTTTAATCGAATTAGGTTTTATCACATCAATGAAAGATTTAAACTACATTAAAAAT 41172 ||| | |||||||| ||||||||||| || | || ||| | |||| || | | Sbjct 123 TATAGATTAATCGAGTTAGGTTTTATAACTAGTAAAAAGGATATGGACTATATCACTACA 64 Query 41173 AATTTAGACAGCTTCACGAAGCGGATTGCTGAAGCCATTAACGGCAGACAAATTGATGCG 41232 | |||| || || || ||||| ||||| || || || || || || ||||| ||||| Sbjct 63 CACCTAGATAGTTTTACTAAGCGTATTGCAGAGGCTATCAATGGTAGGCAAATCAATGCG 4 Query 41233 CC 41234 || Sbjct 3 CC 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 136600867290192