Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_028864.1 Length=43189 Score E Sequences producing significant alignments: (Bits) Value seq178946 179 1e-40 seq224806 95.1 3e-15 >seq178946 Length=318 Score = 179 bits (198), Expect = 1e-40 Identities = 136/159 (86%), Gaps = 1/159 (1%) Strand=Plus/Minus Query 7236 AACGCTGAACCTTCTAATACGTTTGAAACAAAGATTAGACATTCACCTTCAATAACAATT 7295 |||||||| ||||||||||| || ||||| ||||||||||||||||||||||| |||||| Sbjct 318 AACGCTGAGCCTTCTAATACATTCGAAACCAAGATTAGACATTCACCTTCAATCACAATT 259 Query 7296 AACAATAAGAAATTTGCAAATCCTAGCATTACGGACGTAGTAGAAGCAATTAGAAATGGA 7355 ||| |||||||||||| || || || || | | |||||||||||||||||||| ||| Sbjct 258 AACGATAAGAAATTTGTGAACCCAAGTATCAGTCAAGTAGTAGAAGCAATTAGAAACGGA 199 Query 7356 AACTAAAAATTAATTAAAAGGACGGTATTTAATTATGAA 7394 |||||| || || ||||||||||||| | ||||||||| Sbjct 198 AACTAATAA-AAAATAAAAGGACGGTAATCAATTATGAA 161 >seq224806 Length=425 Score = 95.1 bits (104), Expect = 3e-15 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 41903 AAATAAGAGGTGTGACACCTCGTAATGATTTACTAAATGTTAATGTATCAGCAGAAATAA 41962 |||| ||||| ||||||||| | || |||||| |||||| ||| || | | | || | | Sbjct 191 AAATTAGAGGCGTGACACCTAGAAACGATTTATTAAATGCTAACGTTACTGGACAACTCA 132 Query 41963 ATATAAATTATCGTTTATCTGAATTAGGTTTTATTACTAATAAAAATGATATGGA 42017 || |||||||| | ||| || ||||||||||| |||| |||||| |||||||| Sbjct 131 ATTTAAATTATAGATTAATCGAGTTAGGTTTTATAACTAGTAAAAAGGATATGGA 77 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137582896259344