Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_028955.1 Length=197361 Score E Sequences producing significant alignments: (Bits) Value seq62591 89.7 6e-13 >seq62591 Length=200 Score = 89.7 bits (98), Expect = 6e-13 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 186594 TAGATGCTAGAGGTTCAAAACTCATACCAGATAAGAAAGATTTAGGATATTCATTCCCTT 186653 ||||||| | ||||| ||| |||| | ||||| || ||||| || ||| || |||| Sbjct 1 TAGATGCACGTGGTTCCAAATTCATGCTGGATAAAAAGGATTTTGGTTATCATTTTCCTT 60 Query 186654 GTGATGGTCCAGGCAGAGGTGGTACTTGTGATAGTTCTGGTTGGGATGCTTTCTATCTCT 186713 | || ||||| || || ||||||||||| ||| ||| | || ||| |||| ||| | Sbjct 61 GCGACGGTCCGGGATGAAGTGGTACTTGTAATATTTCGGCTTAGGACACTTTTTATTTGG 120 Query 186714 CTGTGTTCTGGGCATTCAATACAATAGCATGGGCAGATTTTTATTGGCACTGGAAGAAC 186772 || |||| | || ||||| || | ||||| |||||| ||||||| ||| || Sbjct 121 TAGTTTTCTTGATGTTTAATACGATTGGATGGGTTACTTTTTAGTGGCACTTCAAGCAC 179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629018999801920