Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_029025.1 Length=41843 Score E Sequences producing significant alignments: (Bits) Value seq254897 345 1e-90 seq112 179 1e-40 seq211690 107 5e-19 >seq254897 Length=556 Score = 345 bits (382), Expect = 1e-90 Identities = 200/206 (97%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 38780 AAATTTAGAGCATGGGATAAAGAGTTAAAAATGATGTGCGACGTATTAAAAATAGATTTT 38839 ||||||||||||||||||| ||| ||||||||||||| || |||||||||||||||||| Sbjct 206 AAATTTAGAGCATGGGATAGAGATATAAAAATGATGTGTGATGTATTAAAAATAGATTTT 147 Query 38840 GGAAACAGAACATTATTTTACCGTCATTGGTTGTATGGCGTAAGTAGAGAAATTGATATA 38899 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 146 GGAAACAGAACATTATTTTACCGTCATTGGTTGTATGGTGTAAGTAGAGAAATTGATATA 87 Query 38900 AAAGAAGTAATTATTATGCAAGCAACGGGAGCAAGATATATTTACGACGAAAAAGGTAAA 38959 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 86 AAAGAAGTAATTATTATGCAAGCAACGGGAGCAAGATATATTTACGACGAAAAAGGTAAA 27 Query 38960 GAAATTTTTGAAGGCGACATTGTTAA 38985 |||||||||||||||||||||||||| Sbjct 26 GAAATTTTTGAAGGCGACATTGTTAA 1 Score = 80.6 bits (88), Expect = 7e-11 Identities = 59/69 (86%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 35047 GATACTTTCACAGTAGAAGTTGAAGAAGAAATTACGAAAGAAACAAAACTTCCTAAGTTT 35106 || ||||||||||||||||| ||||||||||||||||||||||| | |||||| || Sbjct 475 GAAACTTTCACAGTAGAAGTCGAAGAAGAAATTACGAAAGAAACGGCAATTCCTAGACTT 416 Query 35107 TTAGAAATT 35115 |||||| || Sbjct 415 TTAGAAGTT 407 >seq112 Length=266 Score = 179 bits (198), Expect = 1e-40 Identities = 119/132 (90%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 36028 AGGGGGTAGCGGAATGGAATTACATGAATTAAATAAAGGCGATGACATTTGGTTTAAATA 36087 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 135 AGGGGGTAGCGAAATGGAATTACATGAATTAAATAAAGGCGATGACATTTGGTTTAAATA 194 Query 36088 TCCAAACGCAACCAACTCATTCCCTGCAGTGGTGGAAGAGTTGAATTATAACTTTAATGG 36147 ||| || || | | |||||||| || || ||||||||||||||||||||||||||||| Sbjct 195 TCCTAAAGCTAAAACATCATTCCCGGCTGTTGTGGAAGAGTTGAATTATAACTTTAATGG 254 Query 36148 TGAACCTTATCT 36159 |||||||| || Sbjct 255 CGAACCTTACCT 266 >seq211690 Length=386 Score = 107 bits (118), Expect = 5e-19 Identities = 149/206 (72%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 36558 AGATAAGTTCGCAAAACAAAGTTATAGAGCAATTTATGATACAGAAAATGAGGAGGAGTT 36617 |||||||||||||||||||||||||| ||||||||| |||||||| ||||| || | Sbjct 1 AGATAAGTTCGCAAAACAAAGTTATAAAGCAATTTACGATACAGAGAATGAAATAGATAT 60 Query 36618 AGATGACATCACAAGCGTTACAGATGAACATTTTCGATTATACAGAGGACAAGT-CGACA 36676 || || || || |||| |||||| ||| | | | | ||| |||| ||||| Sbjct 61 AGGGGATATTACGCAAGTTAGTGATGAATATTGGCAACAGTTTAAAGG-TAAGTGCGACA 119 Query 36677 TCATCACAGGCGGTTTTCCTTGCCAAGCCTTTAGTATCGCAGGGAACCGCAGAGGGTTTG 36736 | ||| || || ||||||||| | || ||| ||||| || | | ||| |||| Sbjct 120 TTATCGTGGGTGGAACACCTTGCCAATCATTCTCTATTGCAGGCAAAAGAAAAGGTTTTG 179 Query 36737 AAGATACAAGAGGGACAATCTTCTTT 36762 ||||||| |||||||| | |||||| Sbjct 180 AAGATACTCGAGGGACAGTGTTCTTT 205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133291302127920