Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq281289 93.3 4e-14 seq279770 91.5 1e-13 >seq281289 Length=787 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || || | ||| || | |||||| || || || ||||||||||| ||||||||||| Sbjct 552 CCACCACGTAAACGGAGCACCAAGTGAAGGGTTGATTCTTTTTGTATGTTATAATCGGCG 493 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || ||||| | || || ||||| || || ||||| ||||| | |||||||| | || Sbjct 492 AGGGTTCGACCATCCTCGAGCTGCTTTCCAGCAAAAATAAGCCTTTGCTGGTCTGGAGGG 433 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | | |||||| ||| ||||| || | | | | ||||| ||||| Sbjct 432 ATTCCCTCTTTATCCTGAATTTTGGCCTTCACATTGTCAATAGTATCAGAACTTTCCACC 373 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 || | || || |||| || || || ||||| |||||||||||||||| Sbjct 372 TCAAGGGTTATTGTTTTGCCGGTGAGAGTTTTCACAAAGATTTGCATCT 324 >seq279770 Length=767 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/216 (70%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||||||| || || || || || ||||| ||||||||||| ||||| |||| || Sbjct 391 CACCAAATGGAGTGTAGATTCCTTCTGGATATTGTAATCGGCAAGCGTTCGGCCGTCCTC 332 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||| || || || ||||| ||||| | ||| ||||||| || | || |||||| | | | Sbjct 331 AAGTTGCTTACCAGCAAAGATAAGCCTCTGTTGGTCGGGTGGAATGCCCTCTTTAT-CTT 273 Query 39195 GATTTTCTG-TTTGAGCGTCGCCACCGTATC---GCTCGACTCCACGTCCACCGTGATAC 39250 || | | || || | | | | || || ||| ||||| || | ||||| Sbjct 272 GAATCTTTGCCTTTACATTGTCAATTGTGTCTGAGCT---TTCCACCTCGAGGGTGATTG 216 Query 39251 TTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 |||| || || || ||||| || ||||||||||||| Sbjct 215 TTTTGCCAGTGAGGGTTTTTACGAAGATTTGCATCT 180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427948312135256