Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19]
305,112 sequences; 176,727,258 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq281289 93.3 4e-14
seq279770 91.5 1e-13
>seq281289
Length=787
Score = 93.3 bits (102), Expect = 4e-14
Identities = 158/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117
|| || | ||| || | |||||| || || || ||||||||||| |||||||||||
Sbjct 552 CCACCACGTAAACGGAGCACCAAGTGAAGGGTTGATTCTTTTTGTATGTTATAATCGGCG 493
Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177
|| ||||| | || || ||||| || || ||||| ||||| | |||||||| | ||
Sbjct 492 AGGGTTCGACCATCCTCGAGCTGCTTTCCAGCAAAAATAAGCCTTTGCTGGTCTGGAGGG 433
Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237
| | |||||| ||| ||||| || | | | | ||||| |||||
Sbjct 432 ATTCCCTCTTTATCCTGAATTTTGGCCTTCACATTGTCAATAGTATCAGAACTTTCCACC 373
Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286
|| | || || |||| || || || ||||| ||||||||||||||||
Sbjct 372 TCAAGGGTTATTGTTTTGCCGGTGAGAGTTTTCACAAAGATTTGCATCT 324
>seq279770
Length=767
Score = 91.5 bits (100), Expect = 1e-13
Identities = 152/216 (70%), Gaps = 8/216 (4%)
Strand=Plus/Minus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
||||||||| || || || || || ||||| ||||||||||| ||||| |||| ||
Sbjct 391 CACCAAATGGAGTGTAGATTCCTTCTGGATATTGTAATCGGCAAGCGTTCGGCCGTCCTC 332
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194
||| || || || ||||| ||||| | ||| ||||||| || | || |||||| | | |
Sbjct 331 AAGTTGCTTACCAGCAAAGATAAGCCTCTGTTGGTCGGGTGGAATGCCCTCTTTAT-CTT 273
Query 39195 GATTTTCTG-TTTGAGCGTCGCCACCGTATC---GCTCGACTCCACGTCCACCGTGATAC 39250
|| | | || || | | | | || || ||| ||||| || | |||||
Sbjct 272 GAATCTTTGCCTTTACATTGTCAATTGTGTCTGAGCT---TTCCACCTCGAGGGTGATTG 216
Query 39251 TTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286
|||| || || || ||||| || |||||||||||||
Sbjct 215 TTTTGCCAGTGAGGGTTTTTACGAAGATTTGCATCT 180
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427948312135256
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |