Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq126021 122 6e-23 seq279770 102 5e-17 seq21568 98.7 7e-16 seq281289 86.0 4e-12 seq44495 84.2 1e-11 seq281664 82.4 5e-11 >seq126021 Length=250 Score = 122 bits (134), Expect = 6e-23 Identities = 148/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| |||||||| ||||| |||||||| || || || || || |||||||| | | Sbjct 16 AATGCAAATTTTCGTCAAAACGCTCACGGGGAAGACTATTACACTAGAAGTTGAAAGCTC 75 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| | || ||| | ||| | || | || ||||| |||||| | || || |||| Sbjct 76 TGACACAATCGACAATGTCAAAGCTAAGA-TTCAAGACAAGGAAGGTATTCCCCCGGATC 134 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | || | || || ||||| ||||| || || ||||| | || || ||| |||||||| Sbjct 135 AGCAAAGGTTGATCTTTGCAGGCAAGCAGCTCGAAGATGGTCGTACACTAGCCGATTACA 194 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| ||||| |||||||| Sbjct 195 ACATTCAAAAGGAGTCCAC 213 >seq279770 Length=767 Score = 102 bits (112), Expect = 5e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| ||||||||||| || ||||| ||||| ||||| || || | | Sbjct 182 ATGCAAATCTTCGTAAAAACCCTCACTGGCAAAACAATCACCCTCGAGGTGGAAAGCTCA 241 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | |||| ||| ||| || ||||| || | || || || ||| Sbjct 242 GACACAATTGACAATGTAAAGGCAAAGATTCAAGATAAAGAGGGCATTCCACCCGACCAA 301 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||| || || ||||| || |||| || || | | ||||||||| Sbjct 302 CAGAGGCTTATCTTTGCTGGTAAGCAACTTGAGGACGGCCGAACGCTTGCCGATTACAAT 361 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || || || || || ||| | ||||| || Sbjct 362 ATCCAGAAGGAATCTACACTCCATTTGGT 390 >seq21568 Length=652 Score = 98.7 bits (108), Expect = 7e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||||| || || | || || || || |||||| | ||||| || | Sbjct 538 AATGCAGATTTTCGTGAAGACATTGACTGGCAAGACCATCACTTTGGAAGTAGAAAGTTC 479 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| | || ||| | || ||||| | || |||||||| || | || || || | Sbjct 478 CGACACCATCGACAATGTGAAGACAAAGA-TTCAAGACAAAGAGGGAATCCCACCTGACC 420 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | | || ||||| ||||| ||||||||||| | | ||| ||| ||||||| Sbjct 419 AGCAGAGGCTGATCTTTGCAGGCAAGCAACTGGAAGATGGCAGAACTCTAGCAGATTACA 360 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGT 23819 |||| ||||| || || || | ||||| || Sbjct 359 ACATCCAAAAGGAATCAACTCTGCATTTGGT 329 >seq281289 Length=787 Score = 86.0 bits (94), Expect = 4e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || ||||| ||||||||||| || ||||| ||||| | || || || | | Sbjct 553 AATGCAAATCTTCGTGAAAACCCTCACTGGTAAAACCATCACCTTAGAGGTGGAAAGCTC 612 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || || | || ||| | || | || || || ||||| || | || || || | Sbjct 613 TGATACCATCGATAATGTGAAGGC-TAAGATCCAAGATAAAGAGGGAATCCCCCCTGACC 671 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | |||| || || || |||||||| ||||| | |||||||| | || |||| Sbjct 672 AGCAGAGACTAATTTTCGCTGGTAAACAACTTGAAGATGGCCGCACTTTGGCGGACTACA 731 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGT 23819 | || || || || || ||||| ||||| || Sbjct 732 ATATTCAGAAGGAATCAACATTGCATTTGGT 762 >seq44495 Length=1402 Score = 84.2 bits (92), Expect = 1e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||| | || ||||| || ||||| || || || || | | Sbjct 918 ATGCAGATCTTCGTGAAGACCTTGACCGGAAAGACCATCACCCTGGAGGTGGAGAGCTCT 859 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | ||| | |||| || ||||| ||||| | || || ||||| Sbjct 858 GACACGATCGATAATGTGAAAGCTAAAA-TTCAGGACAAGGAAGGCATCCCTCCGGATCA 800 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || || || || || || || || || | | | ||| | | |||||||| Sbjct 799 GCAGAGGCTGATCTTCGCTGGGAAGCAGCTTGAGGATGGAAGGACTCTCGCTGATTACAA 740 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 739 CATTCAGAAGGAGTCCAC 722 >seq281664 Length=792 Score = 82.4 bits (90), Expect = 5e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || || || ||||| || || || || ||||| | || || || | Sbjct 321 AATGCAGATCTTTGTCAAGACCCTGACAGGGAAGACCATCACCTTGGAGGTGGAGAGTTC 262 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || || | || ||| |||| |||||| | ||||| ||||| | || ||||| | Sbjct 261 TGATACAATCGACAATGTTAAGGCAAAAA-TCCAGGACAAGGAAGGAATTCCTCCAGACC 203 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||||| || || ||||| || || || |||||||| | | | || | | ||||||| Sbjct 202 AGCAGCGGTTGATCTTTGCTGGAAAGCAGCTGGAAGATGGAAGGACCCTTGCTGATTACA 143 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || || ||||| || Sbjct 142 ACATTCAGAAGGAGTCTAC 124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 336752693556896