Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19]
305,112 sequences; 176,727,258 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq126021 122 6e-23
seq279770 102 5e-17
seq21568 98.7 7e-16
seq281289 86.0 4e-12
seq44495 84.2 1e-11
seq281664 82.4 5e-11
>seq126021
Length=250
Score = 122 bits (134), Expect = 6e-23
Identities = 148/199 (74%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
|||||| |||||||| ||||| |||||||| || || || || || |||||||| | |
Sbjct 16 AATGCAAATTTTCGTCAAAACGCTCACGGGGAAGACTATTACACTAGAAGTTGAAAGCTC 75
Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728
||||| | || ||| | ||| | || | || ||||| |||||| | || || ||||
Sbjct 76 TGACACAATCGACAATGTCAAAGCTAAGA-TTCAAGACAAGGAAGGTATTCCCCCGGATC 134
Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788
| || | || || ||||| ||||| || || ||||| | || || ||| ||||||||
Sbjct 135 AGCAAAGGTTGATCTTTGCAGGCAAGCAGCTCGAAGATGGTCGTACACTAGCCGATTACA 194
Query 23789 ACATACAAAAAGAGTCCAC 23807
|||| ||||| ||||||||
Sbjct 195 ACATTCAAAAGGAGTCCAC 213
>seq279770
Length=767
Score = 102 bits (112), Expect = 5e-17
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| || ||||| ||||||||||| || ||||| ||||| ||||| || || | |
Sbjct 182 ATGCAAATCTTCGTAAAAACCCTCACTGGCAAAACAATCACCCTCGAGGTGGAAAGCTCA 241
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
||||| |||| | |||| ||| ||| || ||||| || | || || || |||
Sbjct 242 GACACAATTGACAATGTAAAGGCAAAGATTCAAGATAAAGAGGGCATTCCACCCGACCAA 301
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
||| | | || ||||| || || ||||| || |||| || || | | |||||||||
Sbjct 302 CAGAGGCTTATCTTTGCTGGTAAGCAACTTGAGGACGGCCGAACGCTTGCCGATTACAAT 361
Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819
|| || || || || ||| | ||||| ||
Sbjct 362 ATCCAGAAGGAATCTACACTCCATTTGGT 390
>seq21568
Length=652
Score = 98.7 bits (108), Expect = 7e-16
Identities = 150/211 (71%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
||||||||||||||| || || | || || || || |||||| | ||||| || |
Sbjct 538 AATGCAGATTTTCGTGAAGACATTGACTGGCAAGACCATCACTTTGGAAGTAGAAAGTTC 479
Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728
||||| | || ||| | || ||||| | || |||||||| || | || || || |
Sbjct 478 CGACACCATCGACAATGTGAAGACAAAGA-TTCAAGACAAAGAGGGAATCCCACCTGACC 420
Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788
| ||| | | || ||||| ||||| ||||||||||| | | ||| ||| |||||||
Sbjct 419 AGCAGAGGCTGATCTTTGCAGGCAAGCAACTGGAAGATGGCAGAACTCTAGCAGATTACA 360
Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGT 23819
|||| ||||| || || || | ||||| ||
Sbjct 359 ACATCCAAAAGGAATCAACTCTGCATTTGGT 329
>seq281289
Length=787
Score = 86.0 bits (94), Expect = 4e-12
Identities = 147/211 (70%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
|||||| || ||||| ||||||||||| || ||||| ||||| | || || || | |
Sbjct 553 AATGCAAATCTTCGTGAAAACCCTCACTGGTAAAACCATCACCTTAGAGGTGGAAAGCTC 612
Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728
|| || | || ||| | || | || || || ||||| || | || || || |
Sbjct 613 TGATACCATCGATAATGTGAAGGC-TAAGATCCAAGATAAAGAGGGAATCCCCCCTGACC 671
Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788
| ||| | |||| || || || |||||||| ||||| | |||||||| | || ||||
Sbjct 672 AGCAGAGACTAATTTTCGCTGGTAAACAACTTGAAGATGGCCGCACTTTGGCGGACTACA 731
Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGT 23819
| || || || || || ||||| ||||| ||
Sbjct 732 ATATTCAGAAGGAATCAACATTGCATTTGGT 762
>seq44495
Length=1402
Score = 84.2 bits (92), Expect = 1e-11
Identities = 139/198 (70%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| || ||| | || ||||| || ||||| || || || || | |
Sbjct 918 ATGCAGATCTTCGTGAAGACCTTGACCGGAAAGACCATCACCCTGGAGGTGGAGAGCTCT 859
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| | || ||| | ||| | |||| || ||||| ||||| | || || |||||
Sbjct 858 GACACGATCGATAATGTGAAAGCTAAAA-TTCAGGACAAGGAAGGCATCCCTCCGGATCA 800
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| | | || || || || || || || || || | | | ||| | | ||||||||
Sbjct 799 GCAGAGGCTGATCTTCGCTGGGAAGCAGCTTGAGGATGGAAGGACTCTCGCTGATTACAA 740
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || || ||||||||
Sbjct 739 CATTCAGAAGGAGTCCAC 722
>seq281664
Length=792
Score = 82.4 bits (90), Expect = 5e-11
Identities = 139/199 (70%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
||||||||| || || || ||||| || || || || ||||| | || || || |
Sbjct 321 AATGCAGATCTTTGTCAAGACCCTGACAGGGAAGACCATCACCTTGGAGGTGGAGAGTTC 262
Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728
|| || | || ||| |||| |||||| | ||||| ||||| | || ||||| |
Sbjct 261 TGATACAATCGACAATGTTAAGGCAAAAA-TCCAGGACAAGGAAGGAATTCCTCCAGACC 203
Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788
| ||||| || || ||||| || || || |||||||| | | | || | | |||||||
Sbjct 202 AGCAGCGGTTGATCTTTGCTGGAAAGCAGCTGGAAGATGGAAGGACCCTTGCTGATTACA 143
Query 23789 ACATACAAAAAGAGTCCAC 23807
|||| || || ||||| ||
Sbjct 142 ACATTCAGAAGGAGTCTAC 124
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 336752693556896
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |