Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq230622 109 5e-19 seq218924 109 5e-19 >seq230622 Length=445 Score = 109 bits (120), Expect = 5e-19 Identities = 198/287 (69%), Gaps = 2/287 (1%) Strand=Plus/Plus Query 4836 AGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTA 4895 || || ||||| ||||| || |||||||| || || || |||||||| |||||| ||| Sbjct 2 AGACTGTACATCTCAGAGTGGATATTTTCAATGGCGATTTGAAATCCATAAAAGGCTCTG 61 Query 4896 GCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCG 4955 ||||| | ||||||||||| || || | | | | | || || || || || Sbjct 62 GCTTCAGAGACTTGAACTTCTTTCATGAAACGTCCAGCAAGATTCTCCAAAACAATGCCA 121 Query 4956 TCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGG-CTTAAG 5014 ||| || ||||| || || | || |||| || |||| || ||||| || ||||| Sbjct 122 TCAGATGCAGCAAAGAAGGCAAGCACGTGAGTGATGAAGTGCTTCTCGTCGGGAGTTAAG 181 Query 5015 TTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGC 5074 | ||| ||| | | ||| | | | ||| ||||| || | ||||| || || || Sbjct 182 -GACTCCCAATGGCGAAGATCCTGTGAGAGATCGACTTCCTCGGCGGTCCAGAAGGAAGC 240 Query 5075 TTCCGCTTTTTTGTACATAGACCAAATATCAGGATACTGAATCGGAA 5121 ||| || || |||||||| |||||| | ||| |||||||| |||| Sbjct 241 TTCGGCCTTCTTGTACATCTCCCAAATTTGAGGGTACTGAATTGGAA 287 >seq218924 Length=406 Score = 109 bits (120), Expect = 5e-19 Identities = 222/323 (69%), Gaps = 9/323 (3%) Strand=Plus/Plus Query 4540 ACAATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAA 4599 |||| ||||| |||||||||||||| | ||||| ||||| ||||| || || || | Sbjct 90 ACAACAAACAAGCAAAATCACAATGAAGCCCTTCATCTCTTGAAATCAACTCATTTGAGA 149 Query 4600 ACGTTAATCCGGGCATTAAACCTC-TCTTTTTAAGC-CAAAATATAGCGGCAAATGACCC 4657 |||||||||| ||||||| || | | ||||||| | |||||| ||| | || | || Sbjct 150 ACGTTAATCCAGGCATTAGCCCACGTTTTTTTAACCAGAAAATAGAGCAGAAACT--ACC 207 Query 4658 AGAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGAC-CCGAACGAGCTGG 4716 || ||||| || || || || || ||||| | |||| | | ||||||| | Sbjct 208 TGAGAAGAAAATTCCCTCAACACAAGCGAACGCCA-AAATCCGCTCAGCGAACGATTCTG 266 Query 4717 CTTTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGT 4776 |||| |||||| || || ||||| | ||| |||||||| ||||| || | || | Sbjct 267 TACTGTC---AATCCACTTCAACGCCCAATCAGCCTTTTTCTTGACGCAGGGGACAGTTT 323 Query 4777 ATATAGCGTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTA 4836 ||||| ||||| | | || |||| | || | ||||| || || | || | Sbjct 324 CAATAGCACGGAATAACCGATTCTTCTCAATCGAATCCTTGATATAGGTTTCAAGGAGAA 383 Query 4837 GGCTATACATTTCAGAATGTATA 4859 | || ||||| ||||| || ||| Sbjct 384 GACTGTACATCTCAGAGTGGATA 406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425461593642296