Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq273947 168 9e-37 seq218924 105 9e-18 seq230622 102 1e-16 seq220814 102 1e-16 seq58762 86.0 9e-12 >seq273947 Length=700 Score = 168 bits (186), Expect = 9e-37 Identities = 404/604 (67%), Gaps = 8/604 (1%) Strand=Plus/Minus Query 47850 TTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 47909 ||||||||||| || || | ||| || || ||||| || || |||| |||||| || | Sbjct 600 TTTTGATATTCCCCAACTCTTTTTTCAAAGAAATTGGTCTTCCCTTGCAATGAAATCAAT 541 Query 47910 TCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGAAATC 47969 ||||| ||||||||||||| ||||||| ||||| | | ||||| || || | Sbjct 540 TCCATCCAATCAAATGGATTTTGAACATTATAGATTTTGCCATACCCTAAAGCTCCAACC 481 Query 47970 AGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGT 48029 | |||||| || || ||||| || ||| |||||| || | ||||||||| | || Sbjct 480 AATCTATCGGCCACAAATTCAATGTATTGGCTCATCAAATCGCCATTCATTCCAACTAGA 421 Query 48030 TTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTATC 48089 ||| || | || || | || || || ||| || || || | ||| Sbjct 420 GCAACAGGCAAGGCATCACACACGAATTCCCTCTCTATATCTACGGCTTCGGTAACAATC 361 Query 48090 GATGTTAC-CGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATGCAAA 48148 | || || ||| ||||| || | | ||| | | ||| ||||| ||||| Sbjct 360 TCATTCACTCGATTC-TCACTCAGTTTCTTCCTCAACAATGAATACAACAAACAAGCAAA 302 Query 48149 ATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCAT 48208 ||| ||||||||||| || |||| ||| || || || || |||||||| || ||||| Sbjct 301 ATCGCAATGAAGACCCTCGTCTCGTGAAATCAACTCATTTGAGAATGTGAGTCCAGGCAT 242 Query 48209 TAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT-CCAGAAAAGAATATGCCTT 48267 || |||||||||||| | ||| || | || || ||| | || || ||||| || |||| Sbjct 241 TAATCCACGTTTTTTCAACCAGAA-AATGGAGCAGAAGCTACCTGAGAAGAAGATTCCTT 183 Query 48268 CTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGT--TGTGTATCCACCG 48325 | || |||||||| || | ||| | || | | ||| ||| |||||| Sbjct 182 CAACACAAGCAAATGC--CAAAATACGCTCGGCAAACGATTCCGTGCTGTCGATCCACTT 125 Query 48326 TTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAA 48385 | |||||||||||||||||||| ||||| || | || || || ||| ||| | Sbjct 124 TAACGCCCAATCAGCCTTCTTCTTGACACAGGGGACCGTCTCGATTGCACGAAATAATCG 65 Query 48386 GtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTG 48445 | || || || |||||| | ||||| || | | |||||| ||||| || ||||| Sbjct 64 ACTCTTCTCGTTTGAATCTTTGATATAAGTTTCGAGAAGAAGACTGTACATCTCAGAGTG 5 Query 48446 AATA 48449 ||| Sbjct 4 GATA 1 >seq218924 Length=406 Score = 105 bits (116), Expect = 9e-18 Identities = 215/315 (68%), Gaps = 6/315 (2%) Strand=Plus/Plus Query 48138 AAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTG 48197 ||||| ||||||||||||||||| ||||||||||| ||| || || || || || || Sbjct 95 AAACAAGCAAAATCACAATGAAGCCCTTCATCTCTTGAAATCAACTCATTTGAGAACGTT 154 Query 48198 AGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAG 48257 | || |||||||| ||||||||||| | ||| || || | |||| || || ||| Sbjct 155 AATCCAGGCATTAGCCCACGTTTTTTTAACCAGAAAATAGAGCAGAAACTACCTGAGAAG 214 Query 48258 AATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTC-GT--TG 48314 || || || || || || || || || | ||| || ||| | ||| || || Sbjct 215 AAAATTCCCTCAACACAAGCGAACGCCAAAATCCGCTCAGCG-AAC--GATTCTGTACTG 271 Query 48315 TGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCA 48374 | |||||| |||||||||||||| ||||| || || || | ||||| |||||| Sbjct 272 TCAATCCACTTCAACGCCCAATCAGCCTTTTTCTTGACGCAGGGGACAGTTTCAATAGCA 331 Query 48375 TTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATAC 48434 || | || || ||| | ||| || | || || || | | |||||| ||| Sbjct 332 CGGAATAACCGATTCTTCTCAATCGAATCCTTGATATAGGTTTCAAGGAGAAGACTGTAC 391 Query 48435 ATTTCGGAGTGAATA 48449 || || ||||| ||| Sbjct 392 ATCTCAGAGTGGATA 406 >seq230622 Length=445 Score = 102 bits (112), Expect = 1e-16 Identities = 197/291 (68%), Gaps = 0/291 (0%) Strand=Plus/Plus Query 48425 AAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCT 48484 |||||| ||||| || ||||| ||||||||||| || || |||||||| ||||| ||| Sbjct 1 AAGACTGTACATCTCAGAGTGGATATTTTCAATGGCGATTTGAAATCCATAAAAGGCTCT 60 Query 48485 CGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCC 48544 ||||| | || || || || | || ||| |||| | |||||| || || || Sbjct 61 GGCTTCAGAGACTTGAACTTCTTTCATGAAACGTCCAGCAAGATTCTCCAAAACAATGCC 120 Query 48545 ATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAG 48604 |||| |||||||| || || | || || | || || | || |||| || ||| | Sbjct 121 ATCAGATGCAGCAAAGAAGGCAAGCACGTGAGTGATGAAGTGCTTCTCGTCGGGAGTTAA 180 Query 48605 TTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGC 48664 | ||| | | ||| | ||| | ||| ||||| || || ||||| || || || Sbjct 181 GGACTCCCAATGGCGAAGATCCTGTGAGAGATCGACTTCCTCGGCGGTCCAGAAGGAAGC 240 Query 48665 CTCTGCTTTTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAAT 48715 || || || || ||||| | ||| || | | ||| || ||||| || || Sbjct 241 TTCGGCCTTCTTGTACATCTCCCAAATTTGAGGGTACTGAATTGGAAACAT 291 >seq220814 Length=412 Score = 102 bits (112), Expect = 1e-16 Identities = 130/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 47850 TTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 47909 |||||||||||||| || | |||||| || |||||||| || || | |||||| || Sbjct 221 TTTTGATATTCACCAACTCTTTTCTCAAAGAAATTAGTCTTCCCCTGCAATGAAATCAAC 162 Query 47910 TCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGAAATC 47969 ||||| ||||||||||||| | || || ||||| | | | ||||| || || | Sbjct 161 TCCATCCAATCAAATGGATTTTGAACGTTGTAGATTTTCTCATACCCTAAGGCTCCAACC 102 Query 47970 AGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAG 48028 | ||||||| || |||||||| ||| |||||| || | ||||||||| | ||| Sbjct 101 AACCTATCTGTCACAAATTCTATGTATTGGCTCATCAAATCCCCATTCATTCCAACAAG 43 >seq58762 Length=2755 Score = 86.0 bits (94), Expect = 9e-12 Identities = 150/221 (68%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 ||||| ||||| | ||||| || || | ||| |||| | || ||| || | ||| || Sbjct 1795 CCTCCTTGATCAACATATCGAGCAGTATCATTGAAAACCCGCAGCATAGGCACAATCCCN 1736 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 |||||||||| ||||||||| || | || |||||||| ||||| Sbjct 1735 NNNNNNNNN--ATTTGTTCCACGAATATAACTGCCCATGGCACGAATATTGTGGATGGAA 1678 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || || || || ||| ||| || | ||| || ||| || ||||| || ||| Sbjct 1677 ACACCAATACCACCAGCCGACTTGCTAATAACAGCACATTCTTTTAAGGTATCATATATA 1618 Query 78339 CCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCT 78379 || ||||||||||||||| ||||| | || |||||||| Sbjct 1617 CCTTCTATACTGTCATCCTTCATGCATATGAGGAAACAGCT 1577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 692019402663680