Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19]
305,112 sequences; 176,727,258 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq273947 168 9e-37
seq218924 105 9e-18
seq230622 102 1e-16
seq220814 102 1e-16
seq58762 86.0 9e-12
>seq273947
Length=700
Score = 168 bits (186), Expect = 9e-37
Identities = 404/604 (67%), Gaps = 8/604 (1%)
Strand=Plus/Minus
Query 47850 TTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 47909
||||||||||| || || | ||| || || ||||| || || |||| |||||| || |
Sbjct 600 TTTTGATATTCCCCAACTCTTTTTTCAAAGAAATTGGTCTTCCCTTGCAATGAAATCAAT 541
Query 47910 TCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGAAATC 47969
||||| ||||||||||||| ||||||| ||||| | | ||||| || || |
Sbjct 540 TCCATCCAATCAAATGGATTTTGAACATTATAGATTTTGCCATACCCTAAAGCTCCAACC 481
Query 47970 AGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGT 48029
| |||||| || || ||||| || ||| |||||| || | ||||||||| | ||
Sbjct 480 AATCTATCGGCCACAAATTCAATGTATTGGCTCATCAAATCGCCATTCATTCCAACTAGA 421
Query 48030 TTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTATC 48089
||| || | || || | || || || ||| || || || | |||
Sbjct 420 GCAACAGGCAAGGCATCACACACGAATTCCCTCTCTATATCTACGGCTTCGGTAACAATC 361
Query 48090 GATGTTAC-CGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATGCAAA 48148
| || || ||| ||||| || | | ||| | | ||| ||||| |||||
Sbjct 360 TCATTCACTCGATTC-TCACTCAGTTTCTTCCTCAACAATGAATACAACAAACAAGCAAA 302
Query 48149 ATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCAT 48208
||| ||||||||||| || |||| ||| || || || || |||||||| || |||||
Sbjct 301 ATCGCAATGAAGACCCTCGTCTCGTGAAATCAACTCATTTGAGAATGTGAGTCCAGGCAT 242
Query 48209 TAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT-CCAGAAAAGAATATGCCTT 48267
|| |||||||||||| | ||| || | || || ||| | || || ||||| || ||||
Sbjct 241 TAATCCACGTTTTTTCAACCAGAA-AATGGAGCAGAAGCTACCTGAGAAGAAGATTCCTT 183
Query 48268 CTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGT--TGTGTATCCACCG 48325
| || |||||||| || | ||| | || | | ||| ||| ||||||
Sbjct 182 CAACACAAGCAAATGC--CAAAATACGCTCGGCAAACGATTCCGTGCTGTCGATCCACTT 125
Query 48326 TTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAA 48385
| |||||||||||||||||||| ||||| || | || || || ||| ||| |
Sbjct 124 TAACGCCCAATCAGCCTTCTTCTTGACACAGGGGACCGTCTCGATTGCACGAAATAATCG 65
Query 48386 GtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTG 48445
| || || || |||||| | ||||| || | | |||||| ||||| || |||||
Sbjct 64 ACTCTTCTCGTTTGAATCTTTGATATAAGTTTCGAGAAGAAGACTGTACATCTCAGAGTG 5
Query 48446 AATA 48449
|||
Sbjct 4 GATA 1
>seq218924
Length=406
Score = 105 bits (116), Expect = 9e-18
Identities = 215/315 (68%), Gaps = 6/315 (2%)
Strand=Plus/Plus
Query 48138 AAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTG 48197
||||| ||||||||||||||||| ||||||||||| ||| || || || || || ||
Sbjct 95 AAACAAGCAAAATCACAATGAAGCCCTTCATCTCTTGAAATCAACTCATTTGAGAACGTT 154
Query 48198 AGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAG 48257
| || |||||||| ||||||||||| | ||| || || | |||| || || |||
Sbjct 155 AATCCAGGCATTAGCCCACGTTTTTTTAACCAGAAAATAGAGCAGAAACTACCTGAGAAG 214
Query 48258 AATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTC-GT--TG 48314
|| || || || || || || || || | ||| || ||| | ||| || ||
Sbjct 215 AAAATTCCCTCAACACAAGCGAACGCCAAAATCCGCTCAGCG-AAC--GATTCTGTACTG 271
Query 48315 TGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCA 48374
| |||||| |||||||||||||| ||||| || || || | ||||| ||||||
Sbjct 272 TCAATCCACTTCAACGCCCAATCAGCCTTTTTCTTGACGCAGGGGACAGTTTCAATAGCA 331
Query 48375 TTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATAC 48434
|| | || || ||| | ||| || | || || || | | |||||| |||
Sbjct 332 CGGAATAACCGATTCTTCTCAATCGAATCCTTGATATAGGTTTCAAGGAGAAGACTGTAC 391
Query 48435 ATTTCGGAGTGAATA 48449
|| || ||||| |||
Sbjct 392 ATCTCAGAGTGGATA 406
>seq230622
Length=445
Score = 102 bits (112), Expect = 1e-16
Identities = 197/291 (68%), Gaps = 0/291 (0%)
Strand=Plus/Plus
Query 48425 AAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCT 48484
|||||| ||||| || ||||| ||||||||||| || || |||||||| ||||| |||
Sbjct 1 AAGACTGTACATCTCAGAGTGGATATTTTCAATGGCGATTTGAAATCCATAAAAGGCTCT 60
Query 48485 CGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCC 48544
||||| | || || || || | || ||| |||| | |||||| || || ||
Sbjct 61 GGCTTCAGAGACTTGAACTTCTTTCATGAAACGTCCAGCAAGATTCTCCAAAACAATGCC 120
Query 48545 ATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAG 48604
|||| |||||||| || || | || || | || || | || |||| || ||| |
Sbjct 121 ATCAGATGCAGCAAAGAAGGCAAGCACGTGAGTGATGAAGTGCTTCTCGTCGGGAGTTAA 180
Query 48605 TTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGC 48664
| ||| | | ||| | ||| | ||| ||||| || || ||||| || || ||
Sbjct 181 GGACTCCCAATGGCGAAGATCCTGTGAGAGATCGACTTCCTCGGCGGTCCAGAAGGAAGC 240
Query 48665 CTCTGCTTTTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAAT 48715
|| || || || ||||| | ||| || | | ||| || ||||| || ||
Sbjct 241 TTCGGCCTTCTTGTACATCTCCCAAATTTGAGGGTACTGAATTGGAAACAT 291
>seq220814
Length=412
Score = 102 bits (112), Expect = 1e-16
Identities = 130/179 (73%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 47850 TTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 47909
|||||||||||||| || | |||||| || |||||||| || || | |||||| ||
Sbjct 221 TTTTGATATTCACCAACTCTTTTCTCAAAGAAATTAGTCTTCCCCTGCAATGAAATCAAC 162
Query 47910 TCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGAAATC 47969
||||| ||||||||||||| | || || ||||| | | | ||||| || || |
Sbjct 161 TCCATCCAATCAAATGGATTTTGAACGTTGTAGATTTTCTCATACCCTAAGGCTCCAACC 102
Query 47970 AGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAG 48028
| ||||||| || |||||||| ||| |||||| || | ||||||||| | |||
Sbjct 101 AACCTATCTGTCACAAATTCTATGTATTGGCTCATCAAATCCCCATTCATTCCAACAAG 43
>seq58762
Length=2755
Score = 86.0 bits (94), Expect = 9e-12
Identities = 150/221 (68%), Gaps = 2/221 (1%)
Strand=Plus/Minus
Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218
||||| ||||| | ||||| || || | ||| |||| | || ||| || | ||| ||
Sbjct 1795 CCTCCTTGATCAACATATCGAGCAGTATCATTGAAAACCCGCAGCATAGGCACAATCCCN 1736
Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278
|||||||||| ||||||||| || | || |||||||| |||||
Sbjct 1735 NNNNNNNNN--ATTTGTTCCACGAATATAACTGCCCATGGCACGAATATTGTGGATGGAA 1678
Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338
| || || || || ||| ||| || | ||| || ||| || ||||| || |||
Sbjct 1677 ACACCAATACCACCAGCCGACTTGCTAATAACAGCACATTCTTTTAAGGTATCATATATA 1618
Query 78339 CCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCT 78379
|| ||||||||||||||| ||||| | || ||||||||
Sbjct 1617 CCTTCTATACTGTCATCCTTCATGCATATGAGGAAACAGCT 1577
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 692019402663680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |