Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq273947 136 4e-27 seq218924 118 1e-21 seq230622 104 2e-17 >seq273947 Length=700 Score = 136 bits (150), Expect = 4e-27 Identities = 305/448 (68%), Gaps = 10/448 (2%) Strand=Plus/Minus Query 23218 TTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTCTAATGATATATTT 23277 ||||||||||||||||| | | |||| || ||||| ||||| || | ||||| || | Sbjct 600 TTTTGATATTCCCCAACTCTTTTTTCAAAGAAATTGGTCTTCCCTTGCAATGAAATCAAT 541 Query 23278 TCCATAAAATCAAATGGATTAGAAGTATTATATACA--GCTTTACATGATAATTCCTTTA 23335 ||||| ||||||||||||| | |||||| | || ||| | | ||| Sbjct 540 TCCATCCAATCAAATGGATTTTGAACATTATAGATTTTGCCATACCCTAAAGCTCCAACC 481 Query 23336 AAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCATAGTTTATACCTATTA 23395 || ||||| || ||||||||||| ||||| | ||||||||| || || || | || Sbjct 480 AAT--CTATCGGCCACAAATTCAATGTATTGGCTCATCAAATCGCCATTCATTCCAACTA 423 Query 23396 GTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAACAGCATCTTTAATTA 23455 | || || | |||||| | | |||| | || || || || || ||| | Sbjct 422 GAGCAACAGGCAAGGCATCACACACGAATTCCCTCTCTATATCTACGGCTTCGGTAACAA 363 Query 23456 TTTGAA-CAATAACTTCTTCACTAGGTGGATATTTTAAATACTTAA-ACAATAAACATGC 23513 | | | || | |||| |||| || | | | || | | || |||| ||||| || Sbjct 362 TCTCATTCACTCGATTCT-CACTCAGTTTCT-TCCTCAACAATGAATACAACAAACAAGC 305 Query 23514 AAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGG 23573 |||||| ||||| || || || || | |||||| ||||| || ||||| | ||| || Sbjct 304 AAAATCGCAATGAAGACCCTCGTCTCGTGAAATCAACTCATTTGAGAATGTGAGTCCAGG 245 Query 23574 CATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGAT-CCGGAAAAGAAAATAC 23632 ||||||||| |||||||| | ||| || | || |||| | | | || || ||||| || | Sbjct 244 CATTAATCCACGTTTTTTCAACCAGAA-AATGGAGCAGAAGCTACCTGAGAAGAAGATTC 186 Query 23633 CCTCAACAGCCGCAAAGGCCACAAGACG 23660 | |||||| ||||| |||| || ||| Sbjct 185 CTTCAACACAAGCAAATGCCAAAATACG 158 >seq218924 Length=406 Score = 118 bits (130), Expect = 1e-21 Identities = 129/168 (77%), Gaps = 5/168 (3%) Strand=Plus/Plus Query 23492 AATACTTAA-ACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAAT 23550 |||| | || |||| ||||| |||||||||||||| || |||||||| || |||||| Sbjct 80 AATAATGAATACAACAAACAAGCAAAATCACAATGAAGCCCTTCATCTCTTGAAATCAAC 139 Query 23551 TCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCC--AAAATATTGCAG 23608 ||||| || || |||||||| ||||||| || |||||||| | || |||||| |||| Sbjct 140 TCATTTGAGAACGTTAATCCAGGCATTAGCCCACGTTTTTTTAACCAGAAAATAGAGCAG 199 Query 23609 CAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAA 23656 || | || || |||||||| ||||||||| || || |||| || Sbjct 200 AAACT--ACCTGAGAAGAAAATTCCCTCAACACAAGCGAACGCCAAAA 245 >seq230622 Length=445 Score = 104 bits (114), Expect = 2e-17 Identities = 204/302 (68%), Gaps = 0/302 (0%) Strand=Plus/Plus Query 23799 ACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGC 23858 ||| ||||| ||||| || ||||||||||| || || ||||| |||||||| ||| || Sbjct 4 ACTGTACATCTCAGAGTGGATATTTTCAATGGCGATTTGAAATCCATAAAAGGCTCTGGC 63 Query 23859 TTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATC 23918 |||||| | |||||| || || | || | | ||| | ||| || |||||| ||||| Sbjct 64 TTCAGAGACTTGAACTTCTTTCATGAAACGTCCAGCAAGATTCTCCAAAACAATGCCATC 123 Query 23919 ACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAATTT 23978 | ||||||||||| ||||| || | | || || || | || || | | ||| Sbjct 124 AGATGCAGCAAAGAAGGCAAGCACGTGAGTGATGAAGTGCTTCTCGTCGGGAGTTAAGGA 183 Query 23979 TTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTTGCCAA 24038 | ||||| || ||| | ||| | ||| ||||| || | ||||| || || Sbjct 184 CTCCCAATGGCGAAGATCCTGTGAGAGATCGACTTCCTCGGCGGTCCAGAAGGAAGCTTC 243 Query 24039 GGCACGCTTATACATTAGCCAAATATCATTATGTTGTATTGGAAATATTACGAATCTATC 24098 ||| ||| ||||| |||||| | | | || |||||||| || ||| | ||| Sbjct 244 GGCCTTCTTGTACATCTCCCAAATTTGAGGGTACTGAATTGGAAACATGCAGAAGCGATC 303 Query 24099 AG 24100 || Sbjct 304 AG 305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 519499096916800