Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19]
305,112 sequences; 176,727,258 total letters
Query= NC_032111.1
Length=163005
Score E
Sequences producing significant alignments: (Bits) Value
seq273947 136 4e-27
seq218924 118 1e-21
seq230622 104 2e-17
>seq273947
Length=700
Score = 136 bits (150), Expect = 4e-27
Identities = 305/448 (68%), Gaps = 10/448 (2%)
Strand=Plus/Minus
Query 23218 TTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTCTAATGATATATTT 23277
||||||||||||||||| | | |||| || ||||| ||||| || | ||||| || |
Sbjct 600 TTTTGATATTCCCCAACTCTTTTTTCAAAGAAATTGGTCTTCCCTTGCAATGAAATCAAT 541
Query 23278 TCCATAAAATCAAATGGATTAGAAGTATTATATACA--GCTTTACATGATAATTCCTTTA 23335
||||| ||||||||||||| | |||||| | || ||| | | |||
Sbjct 540 TCCATCCAATCAAATGGATTTTGAACATTATAGATTTTGCCATACCCTAAAGCTCCAACC 481
Query 23336 AAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCATAGTTTATACCTATTA 23395
|| ||||| || ||||||||||| ||||| | ||||||||| || || || | ||
Sbjct 480 AAT--CTATCGGCCACAAATTCAATGTATTGGCTCATCAAATCGCCATTCATTCCAACTA 423
Query 23396 GTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAACAGCATCTTTAATTA 23455
| || || | |||||| | | |||| | || || || || || ||| |
Sbjct 422 GAGCAACAGGCAAGGCATCACACACGAATTCCCTCTCTATATCTACGGCTTCGGTAACAA 363
Query 23456 TTTGAA-CAATAACTTCTTCACTAGGTGGATATTTTAAATACTTAA-ACAATAAACATGC 23513
| | | || | |||| |||| || | | | || | | || |||| ||||| ||
Sbjct 362 TCTCATTCACTCGATTCT-CACTCAGTTTCT-TCCTCAACAATGAATACAACAAACAAGC 305
Query 23514 AAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGG 23573
|||||| ||||| || || || || | |||||| ||||| || ||||| | ||| ||
Sbjct 304 AAAATCGCAATGAAGACCCTCGTCTCGTGAAATCAACTCATTTGAGAATGTGAGTCCAGG 245
Query 23574 CATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGAT-CCGGAAAAGAAAATAC 23632
||||||||| |||||||| | ||| || | || |||| | | | || || ||||| || |
Sbjct 244 CATTAATCCACGTTTTTTCAACCAGAA-AATGGAGCAGAAGCTACCTGAGAAGAAGATTC 186
Query 23633 CCTCAACAGCCGCAAAGGCCACAAGACG 23660
| |||||| ||||| |||| || |||
Sbjct 185 CTTCAACACAAGCAAATGCCAAAATACG 158
>seq218924
Length=406
Score = 118 bits (130), Expect = 1e-21
Identities = 129/168 (77%), Gaps = 5/168 (3%)
Strand=Plus/Plus
Query 23492 AATACTTAA-ACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAAT 23550
|||| | || |||| ||||| |||||||||||||| || |||||||| || ||||||
Sbjct 80 AATAATGAATACAACAAACAAGCAAAATCACAATGAAGCCCTTCATCTCTTGAAATCAAC 139
Query 23551 TCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCC--AAAATATTGCAG 23608
||||| || || |||||||| ||||||| || |||||||| | || |||||| ||||
Sbjct 140 TCATTTGAGAACGTTAATCCAGGCATTAGCCCACGTTTTTTTAACCAGAAAATAGAGCAG 199
Query 23609 CAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAA 23656
|| | || || |||||||| ||||||||| || || |||| ||
Sbjct 200 AAACT--ACCTGAGAAGAAAATTCCCTCAACACAAGCGAACGCCAAAA 245
>seq230622
Length=445
Score = 104 bits (114), Expect = 2e-17
Identities = 204/302 (68%), Gaps = 0/302 (0%)
Strand=Plus/Plus
Query 23799 ACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGC 23858
||| ||||| ||||| || ||||||||||| || || ||||| |||||||| ||| ||
Sbjct 4 ACTGTACATCTCAGAGTGGATATTTTCAATGGCGATTTGAAATCCATAAAAGGCTCTGGC 63
Query 23859 TTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATC 23918
|||||| | |||||| || || | || | | ||| | ||| || |||||| |||||
Sbjct 64 TTCAGAGACTTGAACTTCTTTCATGAAACGTCCAGCAAGATTCTCCAAAACAATGCCATC 123
Query 23919 ACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAATTT 23978
| ||||||||||| ||||| || | | || || || | || || | | |||
Sbjct 124 AGATGCAGCAAAGAAGGCAAGCACGTGAGTGATGAAGTGCTTCTCGTCGGGAGTTAAGGA 183
Query 23979 TTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTTGCCAA 24038
| ||||| || ||| | ||| | ||| ||||| || | ||||| || ||
Sbjct 184 CTCCCAATGGCGAAGATCCTGTGAGAGATCGACTTCCTCGGCGGTCCAGAAGGAAGCTTC 243
Query 24039 GGCACGCTTATACATTAGCCAAATATCATTATGTTGTATTGGAAATATTACGAATCTATC 24098
||| ||| ||||| |||||| | | | || |||||||| || ||| | |||
Sbjct 244 GGCCTTCTTGTACATCTCCCAAATTTGAGGGTACTGAATTGGAAACATGCAGAAGCGATC 303
Query 24099 AG 24100
||
Sbjct 304 AG 305
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 519499096916800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |