Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq126021 136 3e-27 seq44495 127 1e-24 seq281664 118 8e-22 seq48980 100 2e-16 seq21568 95.1 9e-15 seq279770 93.3 3e-14 seq281289 86.0 4e-12 seq277496 86.0 4e-12 >seq126021 Length=250 Score = 136 bits (150), Expect = 3e-27 Identities = 174/237 (73%), Gaps = 6/237 (3%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| || | || | | ||| |||||||| ||| ||||||||| |||||||| Sbjct 250 TTGCATTCCACCACGAAGACGGAGCACAAGGTGAAGAGTGGACTCCTTTTGAATGTTGTA 191 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 |||||| ||| || | || || |||||||| || ||||||||||| | |||||||| Sbjct 190 ATCGGCTAGTGTACGACCATCTTCGAGCTGCTTGCCTGCAAAGATCAACCTTTGCTGATC 131 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT---CAATGTTCCTATGGTGTCGGC 44280 | || | ||||||||| || ||||| |||| || ||| | || ||||| | Sbjct 130 CGGGGGAATACCTTCCTTGTCTTGAATCTT-AGCTTTGACATTGT--CGATTGTGTCAGA 74 Query 44281 GGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||| || || | ||||| ||||| |||||||| || || ||||| |||||||| Sbjct 73 GCTTTCAACTTCTAGTGTAATAGTCTTCCCCGTGAGCGTTTTGACGAAAATTTGCAT 17 >seq44495 Length=1402 Score = 127 bits (140), Expect = 1e-24 Identities = 169/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | || | |||||| |||||||| || |||||| |||||||| ||||| Sbjct 1144 CATACCACCACGAAGACGCAACACAAGGTGAAGAGTCGACTCCTTCTGGATGTTATAATC 1203 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 ||| || || | || || || ||||||||||| ||||| | | ||||| |||| Sbjct 1204 GGCAAGGGTACGACCATCCTCTAGTTGCTTCCCGGCGAAGATAAGTCTTTGCTGGTCTGG 1263 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGGATT 44285 || | ||| ||||| ||| ||||| ||| | || ||| | ||||| || | ||||| Sbjct 1264 GGGAATACCCTCCTTGTCCTGGATCTT-TGCCTTAACGTTATCGATGGTATCAGAGGATT 1322 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||||| | || || || || || || |||||||| ||||| |||||||| Sbjct 1323 CAACCTCGAGGGTGATGGTTTTACCTGTCAGGGTCTTTACGAAAATTTGCAT 1374 Score = 125 bits (138), Expect = 5e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || |||||||| ||| |||||| || ||||||||||| ||||| | | || || Sbjct 710 ACGAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGCGAGAGTCCTTCCATCCTCA 769 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 ||||||||||| || ||||||| | ||||||||| | ||| | |||||||| ||| Sbjct 770 AGCTGCTTCCCAGCGAAGATCAGCCTCTGCTGATCCGGAGGGATGCCTTCCTTGTCCTGA 829 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 || || |||| | | || ||||| | | |||||||||| || || |||||| Sbjct 830 ATTTTAGCTTTCACATTATCGATCGTGTCAGAGCTCTCCACCTCCAGGGTGATGGTCTTT 889 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || | ||||||||||||||| ||||| Sbjct 890 CCGGTCAAGGTCTTCACGAAGATCTGCAT 918 >seq281664 Length=792 Score = 118 bits (130), Expect = 8e-22 Identities = 156/212 (74%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCT--CGTCGT 44186 || |||||||| || |||||| || ||||||||||| || || || || | || | Sbjct 112 ACAAGGTGAAGGGTAGACTCCTTCTGAATGTTGTAATCAGCAAG--GGTCCTTCCATCTT 169 Query 44187 CCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCG 44246 |||||||||| || ||||||||||| |||||||| |||| ||| | |||||||| ||| Sbjct 170 CCAGCTGCTTTCCAGCAAAGATCAACCGCTGCTGGTCTGGAGGAATTCCTTCCTTGTCCT 229 Query 44247 TTATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305 || || ||| | || || | || || || | |||||||||| || || ||| Sbjct 230 GGAT-TTTTGCCTTAACATTGTCGATTGTATCAGAACTCTCCACCTCCAAGGTGATGGTC 288 Query 44306 TTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || |||||||| || ||||| ||||| Sbjct 289 TTCCCTGTCAGGGTCTTGACAAAGATCTGCAT 320 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| || ||||| | | || |||||||| || |||||| || |||||||| || Sbjct 318 CATTCCTCCCCTCAGACGAAGGACAAGGTGAAGGGTTGACTCCTTCTGAATGTTGTAGTC 377 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || | | || ||||||||||| |||||||||||||| | ||||| |||| Sbjct 378 AGCAAGAGTCCTTCCATCCTCCAGCTGCTTTCCGGCAAAGATCAATCTTTGCTGGTCTGG 437 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | |||||||| ||| || || ||||| | | ||||| || | | || Sbjct 438 GGGGATGCCTTCCTTGTCCTGAATTTTTGCCTTCACGTTGTCGATGGTATCAGAGCTCTC 497 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| | || || |||||||| || | ||||| |||||||| ||||| Sbjct 498 GACCTCGAGGGTGATGGTCTTTCCAGTCAAAGTCTTAACGAAGATCTGCAT 548 Score = 105 bits (116), Expect = 5e-18 Identities = 165/234 (71%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | || | ||| || || || || || |||||| ||||||||||| || Sbjct 546 CATACCACCACGGAGACGCAAGACAAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTC 605 Query 44167 GGC--GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCT 44224 || ||||| || |||| |||| ||| || || || ||||| | | ||| || ||| Sbjct 606 TGCAAGAGTT--CGGCCGTCCTCCAACTGTTTTCCAGCGAAGATGAGTCTCTGTTGGTCT 663 Query 44225 GAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGAT 44284 | || | ||||||||| ||| ||||| ||||| | | || ||||| | || Sbjct 664 GGGGGGATACCTTCCTTGTCCTGAATCTTGGCCTTCACGTTGTCAATTGTGTCTGAAGAC 723 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || ||||||| || || |||||||| ||||| || || || || ||||||||| Sbjct 724 TCAACCTCCAAGGTGATGGTCTTTCCGGTGAGAGTTTTGACAAAAATTTGCATG 777 >seq48980 Length=3483 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179 || || || || || || |||||| |||||| ||||||||||| ||||| ||| || Sbjct 1041 AGCCTTAAGACAAGATGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGTGTTCGA 982 Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239 | || |||| |||||| ||||| || || | ||||||||| || | || | || ||| Sbjct 981 CCATCCTCCATCTGCTTACCGGCGAAAATGAGACGCTGCTGGTCCGGCGGTATTCCCTCC 922 Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299 || ||| ||||| ||| | | | ||||| || | || ||||| | || Sbjct 921 TTATCCTGAATCTTTGCCTTGACATTATCGATGGTATCAGAACTCTCGACCTCGAGAGTT 862 Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| || || || || ||||||||||| ||||| Sbjct 861 ATGGTCTTCCCGGTAAGCGTTTTCACGAAGATCTGCAT 824 >seq21568 Length=652 Score = 95.1 bits (104), Expect = 9e-15 Identities = 162/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||||| | ||||| || || || |||||||||||||||||||| Sbjct 307 CATCCCACCACGCAGTCGAAGCACCAAATGCAGAGTTGATTCCTTTTGGATGTTGTAATC 366 Query 44167 GGC--GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCT 44224 || ||||| | | || ||||| ||||| || |||||||||| | |||||| || Sbjct 367 TGCTAGAGTT--CTGCCATCTTCCAGTTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCA 424 Query 44225 GAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGAT 44284 | || | || || || || ||||| ||||| | | |||||||||| | Sbjct 425 GGTGGGATTCCCTCTTTGTCTTGAATCTTTGTCTTCACATTGTCGATGGTGTCGGAACTT 484 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || |||| || || ||||| || || | ||||||||||| || ||||| Sbjct 485 TCTACTTCCAAAGTGATGGTCTTGCCAGTCAATGTCTTCACGAAAATCTGCAT 537 >seq279770 Length=767 Score = 93.3 bits (102), Expect = 3e-14 Identities = 166/239 (69%), Gaps = 5/239 (2%) Strand=Plus/Minus Query 44102 TATTT-CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTT 44160 ||||| ||| || || | ||||| | ||||| || || || ||||| ||||| || Sbjct 418 TATTTGCATCCCACCGCGAAGTCTAAGCACCAAATGGAGTGTAGATTCCTTCTGGATATT 359 Query 44161 GTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTG 44220 ||||||||| || || |||| || || ||||| || |||||||| | | ||| || Sbjct 358 GTAATCGGCAAGCGTTCGGCCGTCCTCAAGTTGCTTACCAGCAAAGATAAGCCTCTGTTG 299 Query 44221 ATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCG 44278 || | || | || || || || ||||| ||| || ||| | || ||||| Sbjct 298 GTCGGGTGGAATGCCCTCTTTATCTTGAATCTTTGCCTTTACATTGT--CAATTGTGTCT 241 Query 44279 GCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | | ||||||||| | || || || || || |||||||| || |||||||||||||| Sbjct 240 GAGCTTTCCACCTCGAGGGTGATTGTTTTGCCAGTGAGGGTTTTTACGAAGATTTGCAT 182 Score = 86.0 bits (94), Expect = 4e-12 Identities = 136/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 ||||| || || ||||| |||||||| || |||| || |||||||| || ||||| Sbjct 600 TCCTTCTGAATATTGTAGTCGGCGAGAGTTCGACCGTCCTCAAGCTGCTTACCAGCAAAA 541 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATG 44264 |||| | ||| ||||| | || | ||| ||||| || || || ||| || || Sbjct 540 ATCAGTCTCTGTTGATCAGGTGGGATACCCTCCTTGTCTTGGATTTTAGCCTTGACATTG 481 Query 44265 TTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCA 44324 | | || || || | ||||||||| | ||||| || || || || |||||||||| Sbjct 480 T--CAATTGTATCAGAACTTTCCACCTCAAGAGTAATGGTTTTGCCAGTAAGGGTCTTCA 423 Query 44325 CGAAGATTTGCAT 44337 | || |||||||| Sbjct 422 CAAATATTTGCAT 410 >seq281289 Length=787 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| |||||| || || ||||| ||||| ||||||||||| || | || || Sbjct 535 CACCAAGTGAAGGGTTGATTCTTTTTGTATGTTATAATCGGCGAGGGTTCGACCATCCTC 476 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| || ||||| || | | ||||| |||| ||| | || || || ||| Sbjct 475 GAGCTGCTTTCCAGCAAAAATAAGCCTTTGCTGGTCTGGAGGGATTCCCTCTTTATCCTG 416 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 || || ||||| | | || || || | ||||||||| | || || || || Sbjct 415 AATTTTGGCCTTCACATTGTCAATAGTATCAGAACTTTCCACCTCAAGGGTTATTGTTTT 356 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| || ||||| ||||||||||| Sbjct 355 GCCGGTGAGAGTTTTCACAAAGATTTGCAT 326 >seq277496 Length=739 Score = 86.0 bits (94), Expect = 4e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || || || ||||| |||| |||||| || ||||||||||||||| ||||| || Sbjct 276 CCTCCCCTAAGCCTCAAGACCAAGTGAAGGGTTGACTCCTTTTGGATGTTATAATCTGCA 217 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || || | || |||| ||||| || ||||| || || | |||||| || | ||| Sbjct 216 AGCGTTCGACCATCTTCCAATTGCTTACCAGCAAAAATTAATCTCTGCTGGTCAGGAGGA 157 Query 44231 ACACCTTCCTTTTCC 44245 | ||||||||| ||| Sbjct 156 ATACCTTCCTTGTCC 142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358651756798104