Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq44495 125 7e-24 seq281664 93.3 4e-14 seq279770 93.3 4e-14 seq126021 91.5 1e-13 >seq44495 Length=1402 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| ||||| || || || || ||||||||| |||||||| |||| Sbjct 1148 CCACCACGAAGACGCAACACAAGGTGAAGAGTCGACTCCTTCTGGATGTTATAATCGGCA 1207 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || | || || || ||||| |||||||| || || | || ||||| | |||| Sbjct 1208 AGGGTACGACCATCCTCTAGTTGCTTCCCGGCGAAGATAAGTCTTTGCTGGTCTGGGGGA 1267 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| ||| ||| ||| |||| | | || || || || || Sbjct 1268 ATACCCTCCTTGTCCTGGATCTTTGCCTT-AACGTTATCGATGGTATCAGAGGATTCAAC 1326 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || |||||||| ||||| |||||||||||||| ||||| Sbjct 1327 CTCGAGGGTGATGGTTTTACCTGTCAGGGTCTTTACGAAAATTTGCAT 1374 Score = 104 bits (114), Expect = 2e-17 Identities = 164/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || || || ||| ||||||||||||||| || || | | Sbjct 692 CCACCACGGAGACGCAGGACGAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGCG 751 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || | | || || |||||||| || ||||| ||||| | ||| || |||| || Sbjct 752 AGAGTCCTTCCATCCTCAAGCTGCTTCCCAGCGAAGATCAGCCTCTGCTGATCCGGAGGG 811 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTC 41811 | || ||||||||| ||| |||| |||| || | | ||||| ||| ||| Sbjct 812 ATGCCTTCCTTGTCC-TGAATTTTAGCTTTCACATTATCGATCGTGTCAGAGCT---CTC 867 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||||| || || || || || |||| ||||| ||||| |||||||| Sbjct 868 CACCTCCAGGGTGATGGTCTTTCCGGTCAAGGTCTTCACGAAGATCTGCAT 918 Score = 93.3 bits (102), Expect = 4e-14 Identities = 156/222 (70%), Gaps = 8/222 (4%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||| ||||| || ||||||||| ||||||||||| | | || | Sbjct 929 AGACGAAGCACCAAGTGCAGGGTTGACTCCTTCTGGATGTTATAGTCAGCCAAAGTCCTA 988 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || |||||||| || ||||| ||||| | ||| ||||| | || | | |||| Sbjct 989 CCATCTTCCAGCTGCTTTCCAGCGAAGATCAGCCTCTGCTGGTCTGGTGGGATTCCCTCC 1048 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGA---CTCCACCTCCAC 41820 |||| | || | || || | ||| | | | ||||| ||| ||| ||||| | Sbjct 1049 TTGT-CTTGGATCTTAGCCTTGACGTTGTCAATGGTGTC---CGAACTCTCAACCTCTAA 1104 Query 41821 CGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || || |||| |||||| |||||||||||||| Sbjct 1105 GGTGATGGTCTTGCCGGTCAACGTCTTGACGAAAATCTGCAT 1146 >seq281664 Length=792 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || || || || ||||||||||||||| || || | Sbjct 94 CCACCACGGAGACGGAGGACAAGGTGAAGGGTAGACTCCTTCTGAATGTTGTAATCAGCA 153 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| | | || || |||||||| || || || |||| ||||| ||||| | ||| Sbjct 154 AGGGTCCTTCCATCTTCCAGCTGCTTTCCAGCAAAGATCAACCGCTGCTGGTCTGGAGGA 213 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||||||||| || ||||||| | ||| | | | || || |||||| Sbjct 214 ATTCCTTCCTTGTCC-TGGATTTTTGCCTTAACATTGTCGATTGTATCAGAACTCTCCAC 272 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || || || || || ||||| ||||| || || |||||||| Sbjct 273 CTCCAAGGTGATGGTCTTCCCTGTCAGGGTCTTGACAAAGATCTGCAT 320 Score = 87.8 bits (96), Expect = 2e-12 Identities = 155/222 (70%), Gaps = 8/222 (4%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | || || || || || ||||||||||||||| ||||| | || || | Sbjct 331 AGACGAAGGACAAGGTGAAGGGTTGACTCCTTCTGAATGTTGTAGTCAGCAAGAGTCCTT 390 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || |||||||| ||||| || |||| | || ||||| | ||| | || ||| Sbjct 391 CCATCCTCCAGCTGCTTTCCGGCAAAGATCAATCTTTGCTGGTCTGGGGGGATGCCTTCC 450 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTCCACCTCCAC 41820 |||||| ||| ||||||| | ||| | | | || || ||| ||| ||||| | Sbjct 451 TTGTCC-TGAATTTTTGCCTTCACGTTGTCGATGGTATCAGAGCT---CTCGACCTCGAG 506 Query 41821 CGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || || |||| ||||| ||||| |||||||| Sbjct 507 GGTGATGGTCTTTCCAGTCAAAGTCTTAACGAAGATCTGCAT 548 >seq279770 Length=767 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| |||||| || ||||||||||| || ||||||| | Sbjct 636 CCCCCACGAAGACGAAGAACCAAATGCAGGGTAGATTCCTTCTGAATATTGTAGTCGGCG 577 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || |||| || |||||||| || || || ||||| | |||||| || | || Sbjct 576 AGAGTTCGACCGTCCTCAAGCTGCTTACCAGCAAAAATCAGTCTCTGTTGATCAGGTGGG 517 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGAC--TCCA 41813 | | |||||||| | || |||| || | || | || | ||| | || |||| Sbjct 516 ATACCCTCCTTGT-CTTGGATTTTAGCCTTGACATTGTCA-ATTGTATCAGAACTTTCCA 459 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| | || || ||||| || || || ||||| || || || ||||| Sbjct 458 CCTCAAGAGTAATGGTTTTGCCAGTAAGGGTCTTCACAAATATTTGCAT 410 >seq126021 Length=250 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||| || || || ||| |||||| |||||||| || |||| Sbjct 243 CCACCACGAAGACGGAGCACAAGGTGAAGAGTGGACTCCTTTTGAATGTTGTAATCGGCT 184 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || |||||||||||||| || || |||| | || || |||| |||| Sbjct 183 AGTGTACGACCATCTTCGAGCTGCTTGCCTGCAAAGATCAACCTTTGCTGATCCGGGGGA 124 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTC 41811 | | ||||||| | ||| | || |||| || | | | ||||| ||| || Sbjct 123 ATACCTTCCTTGT-CTTGAATCTTAGCTTTGACATTGTCGATTGTGTCAGAGCT---TTC 68 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || | || || || || ||||| ||||| || |||||||| ||||| Sbjct 67 AACTTCTAGTGTAATAGTCTTCCCCGTGAGCGTTTTGACGAAAATTTGCAT 17 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 460540818774400