Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq9146 122 2e-22 seq11413 98.7 2e-15 seq11359 98.7 2e-15 seq11278 98.7 2e-15 seq11180 98.7 2e-15 seq11114 98.7 2e-15 seq11079 98.7 2e-15 seq10819 98.7 2e-15 seq10644 98.7 2e-15 seq10252 98.7 2e-15 seq10106 98.7 2e-15 seq9775 98.7 2e-15 seq9704 98.7 2e-15 seq9486 98.7 2e-15 seq8574 98.7 2e-15 seq8259 98.7 2e-15 seq8146 98.7 2e-15 seq11243 95.1 3e-14 seq8347 86.0 1e-11 >seq9146 Length=70564 Score = 122 bits (134), Expect = 2e-22 Identities = 562/873 (64%), Gaps = 29/873 (3%) Strand=Plus/Minus Query 229750 TTCTCTGCGTTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCA 229809 |||| | ||| || || || ||||| | || ||||| ||||||||||| || | ||| Sbjct 54817 TTCTGTATGTTTCCGATTCATTATCCACAGATCTGGGAGATGTACAAGAAAGCCGAAGCA 54758 Query 229810 ACTTTCTGGACCACTGAGGAAGTTCCTCTGAACGCA-GACGT-CGTCGACTGGCGTGAGA 229867 | ||||||||| | || ||||| ||| | | || |||| ||| || ||| |||| Sbjct 54757 TCATTCTGGACCGCCGAAGAAGTAGATCT-ATCACATGACGGACGT-GATTGG---GAGA 54703 Query 229868 AACTCAATGACGACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCTCCG 229927 | || || |||| |||||||| |||||||||||| | || | ||||||||| | || | Sbjct 54702 ATCTAAACGACGGTGAACGTCACTTCATCAAACACGTTCTCGCTTTTTTCGCTGCATCAG 54643 Query 229928 ATGGTATTGTGATGGAAAATC-TGCAGACCAACTTTAGTGT-GGAAGTAACGGTTCCAGA 229985 |||| || || | || |||| ||| | | || ||| || || || | || Sbjct 54642 ATGGAATCGTTTTAGAGAATCTTGCTTCTCGA--TTCATGTCAGATGTTCAAGTCTCGGA 54585 Query 229986 GGCACGGCAATTTTATGCTTACCAAA----CATTCAACGAATCTATCCATTCTGAACAAT 230041 ||| || ||||| | | |||| ||| | ||| ||| |||||||| | Sbjct 54584 GGCGCGTGCTTTTTACGGATTTCAAATCGCGATTGA--GAA--TATTCATTCTGAGATGT 54529 Query 230042 ATGCTCTGCTTATCGACGCGCTTATTTCCGACGAGCAAGAACGGAACGAGCTTTTTGATG 230101 || ||| ||| |||| | ||| || | |||| | | | || ||| | Sbjct 54528 ATAGTCTCCTTCTCGATACATATATCAAAGATAATAAAGAGAGAGATCATCTCTTTCGCG 54469 Query 230102 CCATTGAAAACATCCCGGCGGTTCATAACAAGGCAAAGTGGGCTCAGAAATGGCTAGAAC 230161 | ||||||| ||||| ||| || || ||| | ||||| || ||| | || Sbjct 54468 CAATTGAAACTATCCCTTGCGTTACGAAGAAAGCACAATGGGCGATGACTTGGATCGA-- 54411 Query 230162 CTGG---TAAATCGTTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGT 230218 ||| | || | ||||| || || |||| || | | |||||||||||||| | | Sbjct 54410 -TGGATCTCAAACTTTTGCTGAACGAATCGTAGCTTTCGCTTGTGTTGAAGGTATCTTCT 54352 Query 230219 TTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCG 230278 | ||||| || || || | ||||| ||||| ||| |||| | |||||||| | Sbjct 54351 TCTCCGGTAGCTTTTGTTCAATCTTCTGGCTAAAGAAACGAGGTCTCATGCCTGGTTTAA 54292 Query 230279 GTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTA 230338 | | || || || | ||| ||| ||||| || | || | |||| ||| Sbjct 54291 CTTTCTCAAATGAACTAATCTCTCGAGACGAAGGCTTACACTGTGATTTCGCTTGCCTTC 54232 Query 230339 TGTATTCAAAGCTCCAGAAC-AAGCTACCATTCGAGACGGTCAAACAAATCATTACAGAA 230397 | || || | | ||||| ||||| | ||| || || |||| | || Sbjct 54231 TCTACTCTCTG-TTGAGAACGAAGCTTACGGAAGAGCGCGTGAAGTCAATCGTCTGCGAC 54173 Query 230398 GCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTT-ATTGGCAT 230456 || ||||||| ||||| ||||| | || ||||| ||||||| ||| || |||| || Sbjct 54172 GCGGTTGAAATCGAAAGAGAGTTTGTATGCGACGCGCTTCCATG-CGCGTTGGTTGGAAT 54114 Query 230457 GAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACT 230516 |||| ||| || ||| | ||||| || || || || || || | | | ||| | || Sbjct 54113 GAACCGTGAGCTAATGAGTCAGTATATTGAGTTTGTTGCGGATAGATTAATGGTTTCGCT 54054 Query 230517 TGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCT 230576 || |||| || |||||| | || || |||| | ||||| || || || || Sbjct 54053 AGGGTACGGTAAGGTGTACGGTGTGACAAATCCGTTTGATTGGATGGAACTTATATCACT 53994 Query 230577 TCAAGGGAAGACCAACTTCTTCGAAAAGCGTGT 230609 ||||| || || ||||| |||||||| ||||| Sbjct 53993 ACAAGGTAAAACTAACTTTTTCGAAAAACGTGT 53961 >seq11413 Length=180044 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 135149 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 135208 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 135209 CCCACGGTGGGC 135220 >seq11359 Length=124695 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 80212 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 80153 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 80152 CCCACGGTGGGC 80141 >seq11278 Length=297730 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 195813 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 195754 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 195753 CCCACGGTGGGC 195742 >seq11180 Length=497272 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 235183 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 235242 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 235243 CCCACGGTGGGC 235254 >seq11114 Length=280046 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 83039 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 82980 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 82979 CCCACGGTGGGC 82968 >seq11079 Length=31257 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 22606 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 22547 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 22546 CCCACGGTGGGC 22535 >seq10819 Length=32320 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 16595 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 16536 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 16535 CCCACGGTGGGC 16524 >seq10644 Length=28149 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 16455 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 16514 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 16515 CCCACGGTGGGC 16526 >seq10252 Length=116274 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 12584 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 12643 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 12644 CCCACGGTGGGC 12655 >seq10106 Length=83367 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 37693 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 37752 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 37753 CCCACGGTGGGC 37764 >seq9775 Length=13262 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 5871 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 5812 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 5811 CCCACGGTGGGC 5800 >seq9704 Length=119557 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 3659 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 3600 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 3599 CCCACGGTGGGC 3588 >seq9486 Length=154438 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 96883 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 96942 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 96943 CCCACGGTGGGC 96954 >seq8574 Length=77424 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 76150 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 76209 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 76210 CCCACGGTGGGC 76221 >seq8259 Length=134025 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 74 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 15 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 14 CCCACGGTGGGC 3 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 18356 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 18415 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 18416 CCCACGGTGGGC 18427 >seq8146 Length=58908 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 12527 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 12468 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 12467 CCCACGGTGGGC 12456 >seq11243 Length=75149 Score = 95.1 bits (104), Expect = 3e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||| ||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 48942 GCCCGTCTAGCTTAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 49001 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 49002 CCCACGGTGGGC 49013 >seq8347 Length=137323 Score = 86.0 bits (94), Expect = 1e-11 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 61373 AAGAGATTGGGGATATGCGGAAGATTATATCGAGGCTATGTGGTTGATGTTGCAACAAGA 61432 |||||||||||||| || | |||||| | || || ||||||||||||||||||||||| Sbjct 16744 AAGAGATTGGGGATTCGCAGGAGATTACGTTGAAGCAATGTGGTTGATGTTGCAACAAGA 16685 Query 61433 TACTCCAGATGACTACGTTATTGCGAC 61459 | |||||||| |||||| | || || Sbjct 16684 GAAGCCAGATGATTACGTTGTGGCAAC 16658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057665222270450