Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq9146 145 8e-30 seq11595 118 1e-21 >seq9146 Length=70564 Score = 145 bits (160), Expect = 8e-30 Identities = 495/750 (66%), Gaps = 31/750 (4%) Strand=Plus/Plus Query 16674 TTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCT 16733 |||||||||| | ||| ||||||||||||||||||||||| || | ||| |||||| | Sbjct 53947 TTTGGTAATCCCCAACACGTTTTTCGAAAAAGTTAGTTTTACCTTGTAGTGATATAAGTT 54006 Query 16734 CCATGAAATCAAAAGGATTAGTAGCTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTA 16793 |||| ||||||| ||||| || | | | ||| |||||| || | |||| Sbjct 54007 CCATCCAATCAAACGGATTTGTCACACCGTACACCTTACCGTACCCTAGCGAAACCATTA 54066 Query 16794 ATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTA-TAAGA 16852 |||||||||| ||||| || ||||| || | ||||| || | ||||||||| | || Sbjct 54067 ATCTATCCGCAACAAACTCAATATACTGACTCATTAGCTCACGGTTCATTCCAACCAACG 54126 Query 16853 CGTACCGGAAGAGCTTC-CGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAAT 16911 || | ||||| || || | | ||| || | || || ||||||| || | || Sbjct 54127 CGCA-TGGAAGCGCGTCGCATACAAACTC-TCTTTCGATTTCAACCGCGTCGCAGACGAT 54184 Query 16912 --ACTAGCAACTCGTTCCT-CGGACGGTGTATGTTTAAGA-TGTTTAAACATCAGACATG 16967 ||| || || || | || | | | | | || | | || | | || || | Sbjct 54185 TGACT--TCACGCGCTCTTCCGTAAGCTTCGTTCTCAACAGAGAGTAGAGA--AGGCAAG 54240 Query 16968 CGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGG 17027 ||||||| || ||||| || ||||||| ||| ||||| || || || || || || | Sbjct 54241 CGAAATCACAGTGTAAGCCTTCGTCTCGAGAGATTAGTTCATTTGAGAAAGTTAAACCAG 54300 Query 17028 GCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATAC 17087 |||| ||||||||||||| ||| || || | || || || ||||| |||| Sbjct 54301 GCATGAGACCTCGTTTCTTTAGCCAGAAGATTGAACAAAAGCTACCGGAGAAGAAGATAC 54360 Query 17088 CCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACG-TCGCG-TCTTTGTTACGAAT 17145 | || || | || || || | | |||||| || | | | | | || | || || Sbjct 54361 CTTCAACACAAGCGAAAGCTACGATTCGTTCAGCAAAAGTTTGAGATCCAT----CG-AT 54415 Query 17146 CCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAA- 17204 ||| || | |||| | ||||| | | | | |||| || ||||| || || || Sbjct 54416 CCAAGTCATCGCCCATTGTGCTTTCTTCGTAACGCAAGGGATAGTTTCAATTGCGCGAAA 54475 Query 17205 ---ATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACA 17261 || || ||||| ||| | || | ||||| ||||||| || || || |||| Sbjct 54476 GAGATGATCTCTCTCTTTATT----ATCTTTGATATATGTATCGAGAAGGAGACTATACA 54531 Query 17262 TTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGT-AAAAGCATCGGGCTTCCGCT 17320 | || || || || ||||| || || || |||||||||| ||||||| || || |||| Sbjct 54532 TCTCAGAATGAATATTCTCAATCGCGATTTGAAATCCGTAAAAAGCA-CGCGCCTCCGAG 54590 Query 17321 ATTTGAACTTC-CACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGC 17379 | |||||| || || | |||||| || ||||| || ||||| || || || Sbjct 54591 ACTTGAACATCTGACAT-GAATCGAGAAGCAAGATTCTCTAAAACGATTCCATCTGATGC 54649 Query 17380 GGCGAAAAACGCCAATATATGCTTAATGAA 17409 |||||||| || | | || || ||||| Sbjct 54650 AGCGAAAAAAGCGAGAACGTGTTTGATGAA 54679 >seq11595 Length=173172 Score = 118 bits (130), Expect = 1e-21 Identities = 427/650 (66%), Gaps = 25/650 (4%) Strand=Plus/Plus Query 16693 TTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCCATGAAATCAAAAGGATT 16752 ||| || || ||||||||||| |||| || |||||| ||||| ||||||| ||||| Sbjct 64597 TTTCTCAAAGAAGTTAGTTTTACCCTGAAGTGATATAAGTTCCATCCAATCAAACGGATT 64656 Query 16753 AGTAGCTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTAATCTATCCGCTACAAATTC 16812 ||| | | | ||| |||||| || | | | | |||||| || ||||| || Sbjct 64657 AGTCACACCGTACACCTTACCGTACCCAAGCGCACCTAACAGTCTATCAGCAACAAACTC 64716 Query 16813 TATATATTGGCACATTAATTCGCAGTTCATTCCTA-TAAGACGTACCGGAAGAGCTTC-C 16870 ||||| || | |||||| || | ||||||||| | ||| || | ||||| || || | Sbjct 64717 GATATACTGACTCATTAACTCACGGTTCATTCCAACTAACGCGCA-TGGAAGCGCGTCGC 64775 Query 16871 GTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACTAGCAACTCGTTCCT-C 16929 | ||| || | || || | || || || | || || || |||| | Sbjct 64776 ATACAAACTC-TCTTTCAATCTCTACTGCGTCGCAGACGATTGATTTTACACGCTCCTCC 64834 Query 16930 GGACGGTGTATGTTTAAGA-TGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCT 16988 | | | | | |||||| | |||| | || || ||||||||||| ||||| || | Sbjct 64835 GTTAGCTTTGTTCTTAAGAGCGAGTAAAGA--AGGCAAGCGAAATCGCAGTGTAAGCCTT 64892 Query 16989 CGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTA 17048 |||||| ||| | ||||| || || || || || ||||| |||||||||||||| Sbjct 64893 CGTCTCGAGAGATTAACTCGTTTGAGAAAGTTAATCCAGGCATGAGTCCTCGTTTCTTTA 64952 Query 17049 ACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGA 17108 ||| || || | | || || || ||||| ||||| || || | || || || | Sbjct 64953 GCCAGAAGATAGAGCAAAAGCTACCGGAGAAGAAGATACCTTCAACACAAGCGAAAGCTA 65012 Query 17109 TTAATCGTTCGGCGTACG-TCGCG-TCTTTGTTACGAATCCATTTCTGCACCCACTCGGC 17166 | |||||| ||| | | | | | || | || ||||| || | |||||| || Sbjct 65013 CGATTCGTTCAGCGAAGGTTTGAGATCCAT----CG-ATCCACGTCATCGCCCACTGAGC 65067 Query 17167 TTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAA----ATAATTTCTCTTTTTCCT 17222 ||| | | | |||| || ||||| || || || || || ||||| || | Sbjct 65068 TTTCTTCGCAACGCAAGGAATAGTTTCAATAGCACGAAAGAGATGATCTCTCTCTT---T 65124 Query 17223 GTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCA 17282 || || | ||||| ||||||| || || || ||||| || || || || ||||| | Sbjct 65125 GT-TATCTTTGATATAAGTATCGAGAAGGAGACTATACATCTCAGAATGAATATTCTCAA 65183 Query 17283 TGGCTATCTGAAATCCGT-AAAAGCATCGGGCTTCCGCTATTTGAACTTC 17331 | || || || ||||||| ||||||| || || |||| | ||| || || Sbjct 65184 TCGCGATTTGGAATCCGTAAAAAGCA-CGCGCCTCCGAGACTTGTACATC 65232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517469811916200