Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq9146 165 8e-36 seq11595 152 5e-32 >seq9146 Length=70564 Score = 165 bits (182), Expect = 8e-36 Identities = 492/744 (66%), Gaps = 19/744 (3%) Strand=Plus/Plus Query 15912 TTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTT 15971 |||||||||| | ||| ||||||||||| ||||||||||| || | || |||||| || Sbjct 53947 TTTGGTAATCCCCAACACGTTTTTCGAAAAAGTTAGTTTTACCTTGTAGTGATATAAGTT 54006 Query 15972 CCATAAAATCAAAGGGATTAGTAGCTGAAAATATCTTAGAGTACCCCAGTTCCGTAAC-- 16029 |||| ||||||| ||||| || | | | |||| |||||| || || ||| Sbjct 54007 CCATCCAATCAAACGGATTTGTCACACCGTACACCTTACCGTACCCTAG---CGAAACCA 54063 Query 16030 -TAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTA-TA 16087 ||||||||| || ||||| || ||||| |||| ||||| || | || ||||| | | Sbjct 54064 TTAATCTATCCGCAACAAACTCAATATACTGACTCATTAGCTCACGGTTCATTCCAACCA 54123 Query 16088 AGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATG 16147 | || | ||||| || | || ||| | | ||| || ||||||| || | | Sbjct 54124 ACGCGCA-TGGAAGCGCGTCGCATACAAACTCTCTTTCGATTTCAACCGCGTCGCAGACG 54182 Query 16148 ATATCGGTGGCTCG-TGTTTCAGACGGTGTATGGTTTA-GGTGTTTAAACATTAGACACG 16205 || | | || | || | | | | | | | | | || | | || || | Sbjct 54183 ATTGACTTCACGCGCTCTTCCGTAAGCTTCGTTCTCAACAGAGAGTAGAGA--AGGCAAG 54240 Query 16206 CGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTG 16265 |||| || || |||| |||||||||| ||| ||||| || || |||||||| || | Sbjct 54241 CGAAATCACAGTGTAAGCCTTCGTCTCGAGAGATTAGTTCATTTGAGAAAGTTAAACCAG 54300 Query 16266 GCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATAC 16325 |||| ||||||||||||| |||||| || | | ||| || || ||||| |||| Sbjct 54301 GCATGAGACCTCGTTTCTTTAGCCAGAAGATTGAACAAAAGCTACCGGAGAAGAAGATAC 54360 Query 16326 CCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCC 16385 | |||||| | || ||||| | | |||||| || | || | | || || |||| Sbjct 54361 CTTCAACACAAGCGAAAGCTACGATTCGTTCAGCAAAAGTTTGAGATCCAT--CG-ATCC 54417 Query 16386 ATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACA 16445 | || |||||| ||||| | | | ||| || ||||| || || ||| | Sbjct 54418 AAGTCATCGCCCATTGTGCTTTCTTCGTAACGCAAGGGATAGTTTCAATTGCGCGAAAGA 54477 Query 16446 ATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTG 16505 | ||| | || | | |||| | ||||| ||||| | || | ||| ||||| || | Sbjct 54478 GATGATCTCTCTCTTTATTATCTTTGATATATGTATCGAGAAGGAGACTATACATCTCAG 54537 Query 16506 AGTGTATGTTCTCTATGGCTATCTGAAATCCAT-AGAAGCATCGAGCCTCCGCTATTTGT 16564 | || || ||||| || || || |||||||| | | ||||| || ||||||| | ||| Sbjct 54538 AATGAATATTCTCAATCGCGATTTGAAATCCGTAAAAAGCA-CGCGCCTCCGAGACTTGA 54596 Query 16565 ACTTC-CACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAA 16623 || || || | ||||| || || ||||| ||||| || || |||||| || Sbjct 54597 ACATCTGACAT-GAATCGAGAAGCAAGATTCTCTAAAACGATTCCATCTGATGCAGCGAA 54655 Query 16624 AAACGCCAATATGTGCTTAATGAA 16647 ||| || | | ||| || ||||| Sbjct 54656 AAAAGCGAGAACGTGTTTGATGAA 54679 >seq11595 Length=173172 Score = 152 bits (168), Expect = 5e-32 Identities = 546/835 (65%), Gaps = 23/835 (3%) Strand=Plus/Plus Query 15931 TTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCCATAAAATCAAAGGGATT 15990 ||| || |||||||||||||| |||| | |||||| |||||| ||||||| ||||| Sbjct 64597 TTTCTCAAAGAAGTTAGTTTTACCCTGAAGTGATATAAGTTCCATCCAATCAAACGGATT 64656 Query 15991 AGTAGCTGAAAATATCTTAGAGTACCCCAGTTC-CGTAACTAATCTATCTGCTACAAATT 16049 ||| | | | |||| |||||| || | | |||| | |||||| || ||||| | Sbjct 64657 AGTCACACCGTACACCTTACCGTACCCAAGCGCACCTAAC-AGTCTATCAGCAACAAACT 64715 Query 16050 CTATATATTGACACATTAAGTCGCAATTAATTCCTA-TAAGTCGTACCGGAAGAGCTTTT 16108 | ||||| |||| |||||| || | || ||||| | ||| || | ||||| || | Sbjct 64716 CGATATACTGACTCATTAACTCACGGTTCATTCCAACTAACGCGCAT-GGAAGCGCGTCG 64774 Query 16109 GTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAA----TGATATCGGTGGCTCGTGT 16164 || ||| | | ||| ||| | || || || | |||| | |||| | Sbjct 64775 CATACAAACTCTCTTTCAATCTCTACTGCGTCGCAGACGATTGATTTTACACGCTCCTCC 64834 Query 16165 TTCAGACGGTGTATGGTTTAG-GTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTC 16223 | || | | | || || | | |||| | || || ||||| ||||| |||| | Sbjct 64835 GTTAGC---TTTGTTCTTAAGAGCGAGTAAAGA--AGGCAAGCGAAATCGCAGTGTAAGC 64889 Query 16224 CTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCT 16283 ||||||||| ||| | ||||| || |||||||| || ||||| ||||||||||| Sbjct 64890 CTTCGTCTCGAGAGATTAACTCGTTTGAGAAAGTTAATCCAGGCATGAGTCCTCGTTTCT 64949 Query 16284 TTAACCAGAATATCGCAGCAAATG-ACCCCGAAAAGAATATACCCTCAACAGATGCAAAA 16342 ||| |||||| || | |||||| | || || ||||| ||||| |||||| | || ||| Sbjct 64950 TTAGCCAGAAGATAG-AGCAAAAGCTACCGGAGAAGAAGATACCTTCAACACAAGCGAAA 65008 Query 16343 GCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCG 16402 || | | |||||| ||| | || | | || || ||||| || |||| | Sbjct 65009 GCTACGATTCGTTCAGCGAAGGTTTGAGATCCAT--CG-ATCCACGTCATCGCCCACTGA 65065 Query 16403 GCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACAATTTCTCTTTTTCCTGA 16462 ||||| | | ||| || ||||| || || ||| | | ||| | || | Sbjct 65066 GCTTTCTTCGCAACGCAAGGAATAGTTTCAATAGCACGAAAGAGATGATCTCTCTCTTTG 65125 Query 16463 ATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATG 16522 |||| | ||||| ||||| | || | ||| ||||| || || || || ||||| || Sbjct 65126 TTATCTTTGATATAAGTATCGAGAAGGAGACTATACATCTCAGAATGAATATTCTCAATC 65185 Query 16523 GCTATCTGAAATCCAT-AGAAGCATCGAGCCTCCGCTATTTGTACTTC-CACGTAAAATC 16580 || || || ||||| | | ||||| || ||||||| | |||||| || || | |||| Sbjct 65186 GCGATTTGGAATCCGTAAAAAGCA-CGCGCCTCCGAGACTTGTACATCTGACAT-GAATC 65243 Query 16581 GTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCT 16640 | || || ||||| ||||| || || ||||| || || || | | ||| | Sbjct 65244 GAGAAGCGAGATTCTCTAAAACGATTCCATCTGAAGCAGCGAAGAAAGCGAGGACGTGTT 65303 Query 16641 TAATGAAATATTTTTCGTCAGATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATAT 16700 | || || | |||| | | ||| | | |||||| | |||| |||| || Sbjct 65304 TGATAAAGTGACGTTCGCCGTCGTTTAGATTCTCCCAATCGCGTCCGTCTTGTGATAGAT 65363 Query 16701 CCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAAT 16755 | |||||||| | ||||| || || | || || |||||||| | ||| || Sbjct 65364 CTACTTCTTCAGCAGTCCAGAACGATGCTTCGGCTTTCTTATACATCTCCCAGAT 65418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511339509753800