Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq9146 194 2e-44 seq11595 183 4e-41 seq8766 116 4e-21 seq11110 100 3e-16 seq11555 95.1 1e-14 >seq9146 Length=70564 Score = 194 bits (214), Expect = 2e-44 Identities = 584/884 (66%), Gaps = 16/884 (2%) Strand=Plus/Plus Query 23843 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATT 23902 ||||||||| || || ||||||||||||||||| ||||||||||||| || ||||||| Sbjct 53945 TTTTTGGTAATCCCCAACACGTTTTTCGAAAAAGTTAGTTTTACCTTGTAGTGATATAAG 54004 Query 23903 TTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATTCAGAA-A 23961 |||||| |||| | ||||| || ||| || | ||| ||| | | | | Sbjct 54005 TTCCATCCAATCAAACGGATTTGTCACACCGTACAC-CTTACCGTACCCTAGCGAAACCA 54063 Query 23962 TCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAA 24021 | |||||||| || |||||||| ||||| |||| | |||| |||||||| | | Sbjct 54064 TTAATCTATCCGCAACAAACTCAATATACTGACTCATTAGCTCACGGTTCATTCCAACCA 54123 Query 24022 GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAA 24081 |||||| || | | ||| ||| ||| || |||||||| | | Sbjct 54124 ACGCGCATGGAAGCGCGTCGCATACAAACTCTCTTTCGATTTCAACCGCGTCGCAGACGA 54183 Query 24082 TAGATCTTACTGTTTCTTCACTCGG--TGGATA-CAATAAATGTTTAAACATCAAACATG 24138 | || | || ||||| | | | | | ||| | | | || | | | || | Sbjct 54184 TTGACTTCACGCGCTCTTCCGTAAGCTTCGTTCTCAACAGA-GAGTAGAGA--AGGCAAG 54240 Query 24139 CGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGG 24198 ||||||| ||||||| || ||||||| | |||| ||| || || || || | || | Sbjct 54241 CGAAATCACAGTGTAAGCCTTCGTCTCGAGAGATTAGTTCATTTGAGAAAGTTAAACCAG 54300 Query 24199 GCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAAAATT 24257 |||| || || || || || ||||| || || || |||| | | || || ||||| || Sbjct 54301 GCATGAGACCTCGTTTCTTTAGCCAGAAGATTGAA-CAAAAGCTACCGGAGAAGAAGATA 54359 Query 24258 CCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCG-GCGCTGTCATGTATCCA 24316 ||||| || || || || | | || ||| || || | | | ||| ||||| Sbjct 54360 CCTTCAACACAAGCGAAAGCTACGATTCGTTCAGCAAAAGTTTGAGATC-CATCGATCCA 54418 Query 24317 CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAG 24376 | ||||| | || ||||| | || ||||| || || || || || |||||| Sbjct 54419 AGTCATCGCCCATTGTGCTTTCTTCGTAACGCAAGGGATAGTTTCAATTGCGCGAAAGAG 54478 Query 24377 ATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGA 24436 || | | | || ||| ||||||| | ||||||||| | | ||||||||||| || || Sbjct 54479 ATGATCTCTCTCTTTATTATCTTTGATATATGTATCGAGAAGGAGACTATACATCTCAGA 54538 Query 24437 ATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTAC 24496 |||||| || ||||| || |||||||||||||| ||| | ||||| | | || || Sbjct 54539 ATGAATATTCTCAATCGCGATTTGAAATCCGTAAAAAGCACGCGCCTCCGAGACTTGAAC 54598 Query 24497 TTCTATACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAA 24555 ||| ||| ||||| || | ||| || || ||||| || || || |||| Sbjct 54599 ATCT-GACATGAATCGAGAAGCAAGATTCTCTAAAACGATTCCATCTGATGCAGCGAAAA 54657 Query 24556 ACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTAGTTTATTCCAATCATTG 24614 | || | || ||||| || || | ||| | | || |||| || | ||||||| Sbjct 54658 AAGCGAGAACGTGTTTGATGAAGTGACGTTCACCGTCGT-TTAGATTCTCCCAATCACGT 54716 Query 24615 ATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATAC 24674 || | |||| ||| |||||||| | ||||| |||||||| || || || || ||| Sbjct 54717 CCGTCATGTGATAGATCTACTTCTTCGGCGGTCCAGAATGATGCTTCGGCTTTCTTGTAC 54776 Query 24675 ATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCT 24718 || | |||||| | |||| ||||| ||||| ||| ||||| Sbjct 54777 ATCTCCCAGATCTGTGGATAATGAATCGGAAACATACAGAATCT 54820 >seq11595 Length=173172 Score = 183 bits (202), Expect = 4e-41 Identities = 401/590 (68%), Gaps = 8/590 (1%) Strand=Plus/Plus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || |||||||||||||||| || ||||||| | ||||| ||||| || || || | | Sbjct 64868 CAAGCGAAATCGCAGTGTAAGCCTTCGTCTCGAGAGATTAACTCGTTTGAGAAAGTTAAT 64927 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAA 24253 || ||||| || || || || || ||||| || || || ||||| | | || || ||||| Sbjct 64928 CCAGGCATGAGTCCTCGTTTCTTTAGCCAGAAGATAGA-GCAAAAGCTACCGGAGAAGAA 64986 Query 24254 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCG-GCGCTGTCATGTA 24312 || ||||| || || || || | | || ||| | | | | | ||| | Sbjct 64987 GATACCTTCAACACAAGCGAAAGCTACGATTCGTTCAGCGAAGGTTTGAGATC-CATCGA 65045 Query 24313 TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAA 24372 ||||| | ||||| | || ||||| || ||||| || || || |||||| || Sbjct 65046 TCCACGTCATCGCCCACTGAGCTTTCTTCGCAACGCAAGGAATAGTTTCAATAGCACGAA 65105 Query 24373 AGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTT 24432 |||||| | | | || || ||||||| | ||| ||||| | | ||||||||||| | Sbjct 65106 AGAGATGATCTCTCTCTTTGTTATCTTTGATATAAGTATCGAGAAGGAGACTATACATCT 65165 Query 24433 CCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCT 24492 | |||||||| || ||||| || ||||| |||||||| ||| | ||||| | | | Sbjct 65166 CAGAATGAATATTCTCAATCGCGATTTGGAATCCGTAAAAAGCACGCGCCTCCGAGACTT 65225 Query 24493 GTACTTCTATACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 24551 |||| ||| ||| ||||| || | ||| || || ||||| || || || Sbjct 65226 GTACATCT-GACATGAATCGAGAAGCGAGATTCTCTAAAACGATTCCATCTGAAGCAGCG 65284 Query 24552 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTAGTTTATTCCAATC 24610 || || || | || ||||| ||||| | |||| | | || |||| || | |||||| Sbjct 65285 AAGAAAGCGAGGACGTGTTTGATAAAGTGACGTTCGCCGTCGT-TTAGATTCTCCCAATC 65343 Query 24611 ATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTT 24670 |||| |||| ||| |||||||| | ||||| || ||||| || || || || Sbjct 65344 GCGTCCGTCTTGTGATAGATCTACTTCTTCAGCAGTCCAGAACGATGCTTCGGCTTTCTT 65403 Query 24671 ATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTAT 24720 |||||| | |||||| | | || |||||||| || ||| ||||||| Sbjct 65404 ATACATCTCCCAGATCTGTGGGTAGTGAATTGGGAACATACAGAATCTAT 65453 >seq8766 Length=69736 Score = 116 bits (128), Expect = 4e-21 Identities = 167/231 (72%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 54424 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 54483 |||||| ||||| || | |||||||| || || || |||||| | | ||| | | || Sbjct 54575 AGTTCCAGCATTGAAGAGAGTAGGAGATGCATGAGTGAACCATCTCTGAGACATCAAATG 54634 Query 54484 GTACGTCTCGATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTA 54542 ||| || | ||| || || |||||||| | ||| ||||| || || || || | ||| | Sbjct 54635 GTAAGTTTTGATTGCAGATTCTATATCATCCTTG-TGAATACCAACAGCAACCCTCATCA 54693 Query 54543 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTT--ATTTTCAGCAAGTAGGATTTTTC 54600 |||||| |||||||||||||| | ||| || ||||||| | ||| ||| |||| Sbjct 54694 GCATGTGTTGAGGTCTTTCAACAA--CTGTCCCTTGGATTTTCAAAAGGTATGATCTTTC 54751 Query 54601 CAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651 | ||||||||| |||||| | | ||| ||| || || || || ||||| Sbjct 54752 AAGAGTTTTAAACCCAAAAAAATCATATTCAAAATCACGGTCATAGATAAT 54802 >seq11110 Length=291012 Score = 100 bits (110), Expect = 3e-16 Identities = 156/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 54184 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 54243 |||||| || || | |||| ||| || | ||| | || | ||||||||||| |||||| Sbjct 226146 TCCTCCTTGGTCAACATATCGAGCAGTATCATTGAATACACGCAACATTGGAACAATACC 226205 Query 54244 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 54303 ||| |||| ||||| || || || || |||||| ||||| |||||| || || Sbjct 226206 ATTAGATGTTCCATTTGTGCCACGAATGTAACTTCCAGATGCACGGATATTATGAACAGA 226265 Query 54304 TAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 54363 | ||| || || || || ||| || | || || ||| | ||||| || || Sbjct 226266 AACACCAATACCACCAGCAGATTTGCTTATAACAGCACACTCTTTGAGTGTATCGTAAAT 226325 Query 54364 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 54406 |||||| || |||||||| ||||| | ||||||||||||| Sbjct 226326 GCCCTCAATGCTATCATCTTTCATGCAGATTAGAAAACAGCTA 226368 >seq11555 Length=225698 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 54425 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 54484 ||||| | ||| || | ||||||| || || || |||||| | | ||| | || || Sbjct 13602 GTTCCGGAATTGAAGAGAGTAGGAGTTGCATGAGTGAACCATCTCTGAGACATTAAATGA 13661 Query 54485 TACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 54544 || || | ||| || || || ||||| | ||| || || || | || | ||||||| Sbjct 13662 TAAGTTTTGATTGCAGAATCAATATCTTCCTTATGGATACCAACAGAAACCCTCATTAAC 13721 Query 54545 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAA 54604 ||||| |||||||||||||| | ||| | | ||| | | ||| ||| |||| | Sbjct 13722 ATGTGTTGAGGTCTTTCAACAACTTTGCCTTGGACTTTTAATAGGTATGATCTTTCAAGT 13781 Query 54605 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651 |||||||||||||| || | ||| ||| || || || || || || Sbjct 13782 GTTTTAAAACCAAAGTAATCATATTCAAAATCACGATCATAGATTAT 13828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593634656893200