Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq8798 107 2e-18 seq11704 100 2e-16 seq9269 91.5 1e-13 seq9990 89.7 4e-13 seq8641 89.7 4e-13 seq8726 82.4 7e-11 >seq8798 Length=192640 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| | |||||| | || ||||| ||||| || ||| || | | Sbjct 20641 ATGCAAATTTTCGTGAAAACACTCACTGGCAAGACCATCACTCTCGAGGTCGAGAGCTCT 20700 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || ||||| ||| ||| ||||| ||||| | || ||| || Sbjct 20701 GATACCATCGACAATGTTAAGGCAAAGATTCAAGATAAGGAAGGCATTCCTCCAGACCAG 20760 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 |||||| | ||||| || || ||||| || |||||| | || |||| ||||||||| Sbjct 20761 CAAAGATTAATCTTCGCTGGTAAACAGCTTGAAGATGGCCGTACCTTGGCTGATTACAAT 20820 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 |||||||| ||||| || || ||| |||| | |||||| |||| || Sbjct 20821 ATTCAGAAAGAATCAACCCTGCACTTGGTTCTTCGATTAAGAGGTGG 20867 >seq11704 Length=175292 Score = 100 bits (110), Expect = 2e-16 Identities = 88/110 (80%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || ||||||||| | || |||||||||| ||||||| ||||| || |||||||| ||| Sbjct 63403 GACAAAGAAGGTATACCACCAGATCAACAACGACTTATATTTGCTGGTAAACAACTTGAA 63462 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCA 29164 ||| | ||| | || ||||||||||| ||||| || ||||||||||| Sbjct 63463 GATGGTAGAACCTTAGCTGATTACAATATCCAGAAAGAGTCTACTCTTCA 63512 >seq9269 Length=281999 Score = 91.5 bits (100), Expect = 1e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || ||||||||| | || ||||||||||| || || ||||| || || ||||| ||| Sbjct 49633 GACAAAGAAGGTATACCACCTGATCAACAAAGGCTCATATTTGCTGGTAAGCAACTTGAA 49692 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCA 29164 ||| | |||| | || |||||||| |||||||| || ||||||||||| Sbjct 49693 GATGGTAGAACTTTAGCTGATTACAACATTCAGAAAGAGTCTACTCTTCA 49742 >seq9990 Length=160576 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| | || || ||||| || || |||||||| ||| ||| | | Sbjct 159422 ATGCAAATCTTCGTGAAGACTTTGACTGGTAAGACCATTACGCTCGAGGTGGAGAGCTCC 159363 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | | | ||| ||||| || ||||| ||| | || || || Sbjct 159362 GACACCATTGACAACGTGAAGGCCAAAATCCAAGACAAAGAGGGTATTCCACCGGACCAG 159303 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || ||| | |||||||| ||||| || || || ||| || |||||||||||||| Sbjct 159302 CAGAGATTGATCTTTGCCGGCAAGCAGCTTGAGGATGGTCGTACCTTGGCCGATTACAAT 159243 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||||||||| || || |||||| |||| || || | || ||||| Sbjct 159242 ATTCAGAAGGAGTCAACCCTTCACTTGGTCTTGCGTCTTCGTGGAGG 159196 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| | || || | || || || ||||| ||| ||| |||| | | Sbjct 160106 ATGCAGATCTTCGTAAAGACTCTCACCGGAAAGACCATCACCCTCGAGGTGGAAAGCTCT 160047 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | | ||||| ||||| ||||| |||||| | || ||||| Sbjct 160046 GACACCATCGACAACGTTAAGGCCAAAATCCAGGATAAGGAAGGTATTCCTCCGGATCAG 159987 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || |||||||| || || || || || || || ||| |||| ||||||||| Sbjct 159986 CAGAGGCTTATCTTCGCCGGAAAGCAGCTAGAGGACGGTCGTACTTTGGCTGATTACAAT 159927 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGT 29170 || |||||||||||||| |||||| |||| Sbjct 159926 ATCCAGAAGGAATCTACCCTTCACTTGGT 159898 >seq8641 Length=178042 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| | || || ||||| || || |||||||| ||| ||| | | Sbjct 1155 ATGCAAATCTTCGTGAAGACTTTGACTGGTAAGACCATTACGCTCGAGGTGGAGAGCTCC 1214 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | | | ||| ||||| || ||||| ||| | || || || Sbjct 1215 GACACCATTGACAACGTGAAGGCCAAAATCCAAGACAAAGAGGGTATTCCACCGGACCAG 1274 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || ||| | |||||||| ||||| || || || ||| || |||||||||||||| Sbjct 1275 CAGAGATTGATCTTTGCCGGCAAGCAGCTTGAGGATGGTCGTACCTTGGCCGATTACAAT 1334 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||||||||| || || |||||| |||| || || | || ||||| Sbjct 1335 ATTCAGAAGGAGTCAACCCTTCACTTGGTCTTGCGTCTTCGTGGAGG 1381 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| | || || | || || || ||||| ||| ||| |||| | | Sbjct 471 ATGCAGATCTTCGTAAAGACTCTCACCGGAAAGACCATCACCCTCGAGGTGGAAAGCTCT 530 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | | ||||| ||||| ||||| |||||| | || ||||| Sbjct 531 GACACCATCGACAACGTTAAGGCCAAAATCCAGGATAAGGAAGGTATTCCTCCGGATCAG 590 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || |||||||| || || || || || || || ||| |||| ||||||||| Sbjct 591 CAGAGGCTTATCTTCGCCGGAAAGCAGCTAGAGGACGGTCGTACTTTGGCTGATTACAAT 650 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGT 29170 || |||||||||||||| |||||| |||| Sbjct 651 ATCCAGAAGGAATCTACCCTTCACTTGGT 679 >seq8726 Length=217380 Score = 82.4 bits (90), Expect = 7e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 29076 GATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGAT 29135 ||||| || ||| | ||||| || || || ||||||||||| | ||| | || ||| Sbjct 142616 GATCAGCAGAGATTGATCTTCGCCGGAAAGCAACTGGAAGACGGAAGAACACTCGCGGAT 142557 Query 29136 TACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||| || || |||||||| || |||||| ||||| | || ||| ||||||| Sbjct 142556 TACAACATCCAAAAGGAATCGACGCTTCACTTGGTGCTCCGTTTAAGAGGAGG 142504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428274843658325